Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0358 ATGGCGGTGGAAGATTTGCAGTACAGCGGGAAGAGAAAGCGCAAAAGAGAGTCTGGAAACAGAAAACTTCCTGTCAATGAGAGAGTGGAGGTGAGGAGTCTTGAAGAGGGCTTTTTGGGCTCATGGCACCCAGGGACTGTTATCCATTGTGGTAAGCAGAAGCGTCATGTCAAATATGACCATGTTTTAGATGATAATGGGTCTAATTATCTCGTTGATGTGGTGGATGTTCCGGATGTTTGGGATGGCGCCAGTTCTACAAATTGCATTAATCGTGGATTTATTAGACCATTGCCTCCTTTGATGGAATTTGGGAAATGGGACCTCACATTTGGTCTCTGTGTTGATGTGAACTATCAAGAAGCTTGGTGGGAAGGTGTTATTTTTGACCACTGTGATGGGATGGAGGAGAGGTGCATATTTTTCCCCGATTTGGGCGATGAAATGAAGATTGGAGTTGCCCAATTGCGAATTACTCATGACTGGAATAAAGTTACAGAGGATTGGGAGCGTCGGGGGATGTGGGTGTTTCTTGAATTGGTTGAGGAGTGTGAAGAGGATACTTATGTTGCAGTTTCAGTAAAGCAAATTTGGTATGACGTACGGACCAGAAAGGATTTCGATCAGATTAGAGACTGGACTTGTAATGTGAAGGACTTGTGGAGAGTCATGGTAATGGAGGTAATTAATGATTACTTCACACTTACACTAGAAGAAGTTTTCACCGTCTTAGACCTTTCAAAGGGTTTCTTCAAAGAAGCACTAGAACAAGAATCAGGTGAACCTACTGTTAACATTCACTTGAATCTGAAAAGTGATATGGCCAACTGTCAGCCTGTTGTAAATTCTGACAATCAATCAAATAACAACACTAATGTTTATTATGATGCTGATATGGAATCTTTGGGGGATGGAGCAACAAATATGTCTATTATGGGAGACTTAGACATGTCCTTCCCTAAGAAGGAAGTCTTGGTTCAGAAAGAATCTATATCTCCAGTTGAAGAGGTCTTAACTAACCTTCCAGAAGGAATTTCCTGCTGTGCTGCTGGTGAAGTTGTTTCCAGTGCTAGCTGTTATGAAAAAAAAAAACAACAGAGATGTTCAACTCGCAGTAGATCCTTATATTGGCAACCTCTGAAACTGTCTGGAGTTGAATTATGCCCTGATGCTGTTAATCAATATGAATTTGCATCTGAAAAGAAGATTAAGGAACATCTAACAACACAACTCAGAAAACATCTTGCATATCTTGGATGGAAAATTGAGTGGACAGAAGATAACGGTTGTTTTGCTGGACGACGGAGATACAAGTACACCTCGCCTGATAAACAGGGCAAACAGGTTTACATGTCACTTCGTCAAGTTTGTAAATATATTAGAAAGAACAACAATATGAACTATTTGTTGTCCGAAGATGACCAGATAAGGATGTATCCTACAGTCGATAGTACTATTTCATGTCAGCTTCTTGATCAACCTAAAAAGTGTCATGATCCAGATGTTTTTCCTGCAGTTGTGCCACCTCCTCCTCCAAGTAAAGCTGTAGTTGAACCAGAATTTTGTCCTGAATCTGTTTTGAAATATTACTTGCATGCATTTGAGAAAGGCTCCAAGGCTGATAAAAAAAACATGATACTTAAAGCAAAAAAGCACCTGTTAGCAGAAGGGTGGAATTTTGGCTACCCAGCTGAAAAAGGAAAGGGATTGACCTACAAGTCACCACAAAATCGGTGTTTTGGCTCACTTCGAGTAGCATGCAGATTTTATATCGAAGAAAGTCTTCCTAAATGGATTAGTTCTGGCATGGGACCTTTAGATGTCTCGGCCATAAATGAGGTCAGTCATGTTGATTATAGTGATAAATTATTGCGCTGTGTATCCCAATTGCTTCAGAAGGAACAAGAATTTCATGATGTAAATGGTGTACCTGCAAGTATATTAACTGGGAATCACAAGCTAAAACGCTCAAGGAATTCTAAAGCCATCCTACCTAAAATCCAGAGAAAAGGACTACCTATTCGGTTGCTACGATCAAGCAAAAGGGTGCAGAAGGCTTGTACTCCTTGTCCGTCACAGCAAAAACCTCAAAATGTTCTGTCTTGGTTAATAGATTGCAACATAGTGTTACCAAGGGATAAGGTCCTTTACAGGGCAAGAGGCACATGTCGTCCTATGGCTGAGGGGCGAATAACTCGTGATGGAATCAAGTGTAGCTGTTGTCAGAGGTTATATAGTCTTGGTGGCTTTGAAGTTCATGCTAATGGTCGTAGTAGTCGCAGACCTTCTGCTAGTATCTTCCTGAAAGATGGTAGGTCGCTCCTAGATTGCCAGATACAAATAATGCATGATCGTAGAACATTAGGAACTATGGAAAGACCATCCAAGGATACATGTCAAGCTGAGAATGACTGCATTTGTTCTGCTTGTCACTATGGCGGTGAACTAATTTTATGTGATCAATGCCCATCCTCTTTTCATAAGAGCTGTCTTGCATTGGAGGATATACCTGAAGGTGATTGGTTTTGTCCATCATGTCGATGCGGGATTTGCGGCCAAAGTAAAATTGAAGGGGCTGAGGATGGAAAATTTCTTACTTGCTTTCAGTGTGAACATAAATATCATGCAAGATGCCTGAACAAAAGGTCTGTAGTTAAGGCAGGAAAATATCTGGAAAATTGGTTCTGTGGGAAAAGCTGTGAAAAGATATATTCCAGCCTCCATAAACTTCTAGGAGAACCGGTTGCATTGGGTGTGAACAATCTTAGTTGGACATTGCTGAAGTTTGTCAACTTTGAGAGTTGTGATCTTGGTAGCTCTAATAATGATTTCTTGGCAGAGAGTCACAGCAAACTCAATGTTTCTCTTTCAGTGATGCACGAATGTTTTGAGCCCTTAAAGGAACTTTACTCTGGCAGAGATCTCATGGAAGATGTTCTTTTCAGCAAATGGATGGATGTACTGGGATCCACAGTATTGTCAGAGCTTAATCGATTGAACTTCCAGGGCTTCTATACTATACTTCTGGAGAGAAATGAAGAATTGATTAGTGTGGCGACTGTTAGGGTCCATGGAGAAAAGGTAGCAGAAGTACCTCTTGTCGGTACCAGATTTCAGTATCGTCGACTTGGAATGTGCCGCATTTTAATGAATGAGCTTGAAAAGATGCTCATGCAACTAGGAGTGGAGAGGCTAGTTTTGCCTGCTGTTCCCAGTGTGCTAGGAACCTGGACCACTTCTTTTGGCTTTTCAGAGATGACAAATTCTGAGAGATCACAGTTTCTGGATTATACTTTCCTTGACTTTCAGGATACCATCATGTGCCAGAAGCTTTTGATGAAGTCTCCTTTAGATTTAGTTTTGTCAACAGAGACCCAGTCAAAACCACATGATATTTTATCTACTAGTGGTAGTATTATTTGTGATCAGTCCAGTCCGGTATCTGAAGTATATCAAGCAGAAGAGACTGACAAAAGTGGGGGCCAGGATCTACAAATGTTGGTGAATCTTAATCACCTAGAACGGCAATCTCTGATCCTCTGCAATATGAAGATCATGATGCCTGTCATGCCATCTGATCAATATGCTTCAATTGGGAGGTGGAGTGTTGTTAATGTTGATGTTGATAGTTACAATTTAAGCAATGCTTCTGCTGGCAACAATTATAATCTTGGCAGTGCTGATATTGATCCAGTTGCCATGCCAAATTTGCAGGGCAACCAGTTGCAGAATGGAACCAGTCCAGAATGCTCACTTGAAGATGACCATTTAAAAGATGTTGGCATGTACGATGGCCCATTTAAGTGCTACAAACGAAGGAATGTCAGCAGGACATGA 3837 0.4102 MAVEDLQYSGKRKRKRESGNRKLPVNERVEVRSLEEGFLGSWHPGTVIHCGKQKRHVKYDHVLDDNGSNYLVDVVDVPDVWDGASSTNCINRGFIRPLPPLMEFGKWDLTFGLCVDVNYQEAWWEGVIFDHCDGMEERCIFFPDLGDEMKIGVAQLRITHDWNKVTEDWERRGMWVFLELVEECEEDTYVAVSVKQIWYDVRTRKDFDQIRDWTCNVKDLWRVMVMEVINDYFTLTLEEVFTVLDLSKGFFKEALEQESGEPTVNIHLNLKSDMANCQPVVNSDNQSNNNTNVYYDADMESLGDGATNMSIMGDLDMSFPKKEVLVQKESISPVEEVLTNLPEGISCCAAGEVVSSASCYEKKKQQRCSTRSRSLYWQPLKLSGVELCPDAVNQYEFASEKKIKEHLTTQLRKHLAYLGWKIEWTEDNGCFAGRRRYKYTSPDKQGKQVYMSLRQVCKYIRKNNNMNYLLSEDDQIRMYPTVDSTISCQLLDQPKKCHDPDVFPAVVPPPPPSKAVVEPEFCPESVLKYYLHAFEKGSKADKKNMILKAKKHLLAEGWNFGYPAEKGKGLTYKSPQNRCFGSLRVACRFYIEESLPKWISSGMGPLDVSAINEVSHVDYSDKLLRCVSQLLQKEQEFHDVNGVPASILTGNHKLKRSRNSKAILPKIQRKGLPIRLLRSSKRVQKACTPCPSQQKPQNVLSWLIDCNIVLPRDKVLYRARGTCRPMAEGRITRDGIKCSCCQRLYSLGGFEVHANGRSSRRPSASIFLKDGRSLLDCQIQIMHDRRTLGTMERPSKDTCQAENDCICSACHYGGELILCDQCPSSFHKSCLALEDIPEGDWFCPSCRCGICGQSKIEGAEDGKFLTCFQCEHKYHARCLNKRSVVKAGKYLENWFCGKSCEKIYSSLHKLLGEPVALGVNNLSWTLLKFVNFESCDLGSSNNDFLAESHSKLNVSLSVMHECFEPLKELYSGRDLMEDVLFSKWMDVLGSTVLSELNRLNFQGFYTILLERNEELISVATVRVHGEKVAEVPLVGTRFQYRRLGMCRILMNELEKMLMQLGVERLVLPAVPSVLGTWTTSFGFSEMTNSERSQFLDYTFLDFQDTIMCQKLLMKSPLDLVLSTETQSKPHDILSTSGSIICDQSSPVSEVYQAEETDKSGGQDLQMLVNLNHLERQSLILCNMKIMMPVMPSDQYASIGRWSVVNVDVDSYNLSNASAGNNYNLGSADIDPVAMPNLQGNQLQNGTSPECSLEDDHLKDVGMYDGPFKCYKRRNVSRT 1278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0358 1278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 798 848 IPR013083 -
Glsi08g0358 1278 CDD NAT_SF 1007 1067 - -
Glsi08g0358 1278 MobiDBLite consensus disorder prediction 1 22 - -
Glsi08g0358 1278 Pfam Tify domain binding domain 729 780 IPR032308 -
Glsi08g0358 1278 PANTHER PHD FINGER PROTEIN 12 534 1150 IPR042163 GO:0003714|GO:0045892
Glsi08g0358 1278 SMART PHD_3 806 847 IPR001965 -
Glsi08g0358 1278 SMART PHD_3 848 900 IPR001965 -
Glsi08g0358 1278 SUPERFAMILY FYVE/PHD zinc finger 791 847 IPR011011 -
Glsi08g0358 1278 Gene3D - 975 1097 - -
Glsi08g0358 1278 Pfam Agenet domain 27 100 IPR008395 -
Glsi08g0358 1278 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 958 1118 IPR000182 GO:0016747
Glsi08g0358 1278 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 849 903 IPR013083 -
Glsi08g0358 1278 SUPERFAMILY FYVE/PHD zinc finger 848 897 IPR011011 -
Glsi08g0358 1278 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 997 1084 IPR016181 -
Glsi08g0358 1278 ProSiteProfiles Zinc finger PHD-type profile. 804 849 IPR019787 -
Glsi08g0358 1278 Pfam PHD-finger 805 848 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0358 Glsi-ChrGlsi08 3110533 3122161 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0358 32 1060 PHD Transcription Factor Family AT5G58610 36.233 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi08g0358 Agenet 6.7e-16 CL0049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0358 08 3110533 3122161 Glsi08g0358 08 3110533 3122161 ECH