LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi08g0351	ATGTGCAGTGGTTCCAAGAGGAAACCTACCCAACCAGGTTTCATTATGGAGGGTGAACATGGGAAACAAGAAGGGCTGCGTCACAAAACTTCTGTTTTGCTTGAACTCTCAGCCTCAGATGATCTTGTGCAGTTCAGAGATGCAGTTGAACAAGAGGGACTTGATGTTGATGAGGTGGGTTTCTGGTATGGAAGGAGGATTGGCTCGAAGGAACTGAGTTATGAAGAAAGGACTCCTCTCATGATTGCTGCTATGTTTGGAAGCAAGGGTGTAGTAAGTTATATACTTGGAACAGGTCGTGTTGATGTTAACCAGACTTGTGGATCAGATGGAGCTACTGCCCTTCATTGTGCTGTTGCTGGGGGTTCTGCTTCATCCCCTGAGATTGTCAAGCTTTTGCTTGATTCATGTGCAGATGTTAGTGCTACTGATGCTAATGGTAACCGACCTGGTGACTTGATTGTTTTTGGCCCTAATTCTATCTTCAATTCAAGGAAGAGGATACTACAAGCCATATTGAAGGGTGCAGATATTTTTGATGAGGCATTTCTCTCATTTGAGAAAGCAGTTGGTCAAATAGAGGAACACCAACAGCAAGATACAGCTTCACCTCGTGTTTCAAAAGATGGGACTGAGAAGAAAGATTATCCTGTGGATCTTTCTCTCCCAGACATAAAGAGTGGGATATATAGTACTGATGAGTTTAGGATGTATACATTTAAAGTGAAGCCTTGCTCAAGGGCTTATTCTCATGATTGGACTGAGTGCCCCTATGTTCATCCAGGGGAAAATGCTAGGCGACGTGATCCAAGGAAATATCATTATAGCTGTGTACCTTGCCCAGAGTTTCGCAAGGGATCGTGCAGCAAGGGGGACGCCTGTGAGTATGCACATGGTATTTTTGAGTGCTGGCTTCACCCTGCCCAGTATCGGACCCGGCTATGCAAGGATGAAAGTGGGTGCACTAGAAGAGTTTGCTTCTTTGCTCATAAGCTTGATGAGCTTCGCCCTTTGTATGCTTCTACTGGTTCAGCTATACCTTCTCCCAGATCATTTTCAGCTAGTTCTAGTTCCTTGGAGATGGGACCACTTAGCCCTCTCTCACATGGTACCCCATCTACCTTGATACCCCCCGCCTCGACACCACCTCTAACTCCCTCTGGTGCATCTTCTCCTATGGGAGGAACCATGTGGCAGACACAGTCTAATGGTGGAGTTCCTATCCTGCAACTTCCAAGAAGCAGATTGAAGACTGCTTCAAGTGCTAGAGATATTGATTTAGATATTGAATTGATTGGACTTGAAAATCATCGACTTAGGCAGCAGTTAATGATGGATGAGATTTCTGGTCTTTCCTCCCCCTCCAGCTGGAAGAATTCCATGGCTAATAATCCATCTTTTCCTGGCTCTTTGGGTGATCGTGCTGGGGAATTGAATAGGCTTGTAGGAGTGAAGCCGACTAACCTTGAAGACATCTTTGGGTCTCTTGATCCATCAATTTTGCCTAAATTACAGGGAGTCTCACTAGATGCTGTAGGACCTCAGTTACAATCTCCAACTGGAATCCAGGCACATCAGAATGTAAACCTGCAGCTGCGAAGCTACTCACCCAACCTTTCAAATTCAAATGTGATGGGATCACCATCTTTTAAGGATGATCCATCTGGGGCAGCAGCTACAATTGCTTTTAATCCAAGAACTGCTGCCTTTTCTAAGCGGAGCCAAAGCTTTATTGAGCGTAGTGTGGTGAACCGTCATCCAGAGCTTTCTTCTCCAATTTCTGCAGCAACAAAGCCTTCTGCCTTCCCTGATTGGAGCTCCCCTGATGGCAAATTGGACTGGGCCATCCATGGAGAAGAGCTGAATAAACTCAGAAAATCTGCTTCTTTTGGATTTCGAAGCAACACGAGTCCTTTGACGATGGCTACAACTGCAGTGCCAGCACATGTTGATGAACCAGATGTGTCTTGGGTTCATTCACTAGTGAAGGATGCTCCGCCATTGGAATCTGGTCAATCTAGTGTTGAAGAGCAGCAAAAGCAGCAGCAATTCCTTCTTAACAATGGAACTGATGTAGTTCCAGCTTGGCTGGAGCAATTTTACGTGGAGCAGGAGCAAATGGTGGCGTGA	2130	0.4559	MCSGSKRKPTQPGFIMEGEHGKQEGLRHKTSVLLELSASDDLVQFRDAVEQEGLDVDEVGFWYGRRIGSKELSYEERTPLMIAAMFGSKGVVSYILGTGRVDVNQTCGSDGATALHCAVAGGSASSPEIVKLLLDSCADVSATDANGNRPGDLIVFGPNSIFNSRKRILQAILKGADIFDEAFLSFEKAVGQIEEHQQQDTASPRVSKDGTEKKDYPVDLSLPDIKSGIYSTDEFRMYTFKVKPCSRAYSHDWTECPYVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDESGCTRRVCFFAHKLDELRPLYASTGSAIPSPRSFSASSSSLEMGPLSPLSHGTPSTLIPPASTPPLTPSGASSPMGGTMWQTQSNGGVPILQLPRSRLKTASSARDIDLDIELIGLENHRLRQQLMMDEISGLSSPSSWKNSMANNPSFPGSLGDRAGELNRLVGVKPTNLEDIFGSLDPSILPKLQGVSLDAVGPQLQSPTGIQAHQNVNLQLRSYSPNLSNSNVMGSPSFKDDPSGAAATIAFNPRTAAFSKRSQSFIERSVVNRHPELSSPISAATKPSAFPDWSSPDGKLDWAIHGEELNKLRKSASFGFRSNTSPLTMATTAVPAHVDEPDVSWVHSLVKDAPPLESGQSSVEEQQKQQQFLLNNGTDVVPAWLEQFYVEQEQMVA	709

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi08g0351	709	SUPERFAMILY	Ankyrin repeat	70	154	IPR036770	-
	Glsi08g0351	709	MobiDBLite	consensus disorder prediction	348	375	-	-
	Glsi08g0351	709	MobiDBLite	consensus disorder prediction	194	213	-	-
	Glsi08g0351	709	PANTHER	UNKEMPT FAMILY MEMBER	35	665	IPR045234	-
	Glsi08g0351	709	SMART	c3hfinal6	309	332	IPR000571	GO:0046872
	Glsi08g0351	709	SMART	c3hfinal6	274	300	IPR000571	GO:0046872
	Glsi08g0351	709	Gene3D	-	276	337	-	-
	Glsi08g0351	709	ProSiteProfiles	Ankyrin repeat region circular profile.	110	144	-	-
	Glsi08g0351	709	SMART	ANK_2a	110	142	IPR002110	GO:0005515
	Glsi08g0351	709	SMART	ANK_2a	75	105	IPR002110	GO:0005515
	Glsi08g0351	709	FunFam	Zinc finger CCCH domain-containing protein 66	232	300	-	-
	Glsi08g0351	709	Pfam	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	279	299	IPR000571	GO:0046872
	Glsi08g0351	709	MobiDBLite	consensus disorder prediction	348	405	-	-
	Glsi08g0351	709	MobiDBLite	consensus disorder prediction	1	23	-	-
	Glsi08g0351	709	MobiDBLite	consensus disorder prediction	386	405	-	-
	Glsi08g0351	709	ProSiteProfiles	Zinc finger C3H1-type profile.	279	301	IPR000571	GO:0046872
	Glsi08g0351	709	Gene3D	-	27	158	IPR036770	-
	Glsi08g0351	709	ProSiteProfiles	Ankyrin repeat profile.	110	145	IPR002110	GO:0005515
	Glsi08g0351	709	Pfam	Ankyrin repeats (3 copies)	73	144	IPR002110	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi08g0351	Glsi-ChrGlsi08	3063297	3065426	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi08g0351	28	704	C2H2 Transcription Factor Family	AT5G12850	38.194	1.45e-143	434

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Glsi08g0351		Ank_2	7.4e-09	CL0465