Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0343 ATGGCGAAAACGACGTCGGTTCTGCTCTGGACACTGGTCCTCTTCGGCACCCTAGCTCTCATCCAGGCGAAGAAGTCGAAGGAGGACTTGAAAGAAGTGACACACAAGGTTTATTTTGACGTTGAAATTGATGGAAAGCCTGCTGGTCGTGTCGTAATGGGTCTTTTTGGGAAGACAGTCCCAAAAACTGCAGAGAACTTTCGAGCTCTTTGCACAGGAGAGAAAGGAACTGGAAAAAGTGGAAAGCCTCTCCATTACAAGGGTAGTACATTCCACAGGATTATACCCAGCTTTATGATCCAAGGAGGTGATTTTACCCATGGCAATGGAATGGGTGGGGAATCAATCTACGGAGAGAAGTTTGCTGATGAGAACTTCAAGATGAAACATACTGGACCAGGAATTTTATCAATGGCAAACGCTGGTCCTGATACCAATGGTTCACAATTCTTCATTACGACTGTGACAACTAGCTGGTTGGATGGAAGGCACGTTGTGTTTGGAAAAGTGCTTTCTGGAATGGATGTGGTTTACAAGATGGAAGCTGAAGGAAAACAAAGTGGCACTCCTAAGAGCAAGGTCGTAATTGCTGACAGCGGTGAACTTCCTCTATAA 615 0.4537 MAKTTSVLLWTLVLFGTLALIQAKKSKEDLKEVTHKVYFDVEIDGKPAGRVVMGLFGKTVPKTAENFRALCTGEKGTGKSGKPLHYKGSTFHRIIPSFMIQGGDFTHGNGMGGESIYGEKFADENFKMKHTGPGILSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKMEAEGKQSGTPKSKVVIADSGELPL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0343 204 SUPERFAMILY Cyclophilin-like 33 202 IPR029000 -
Glsi08g0343 204 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 36 202 - -
Glsi08g0343 204 PIRSF Peptidylpro_ismrse 19 203 IPR024936 GO:0003755
Glsi08g0343 204 FunFam Peptidyl-prolyl cis-trans isomerase 30 203 - -
Glsi08g0343 204 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 38 201 IPR002130 GO:0000413|GO:0003755
Glsi08g0343 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 162 177 IPR002130 GO:0000413|GO:0003755
Glsi08g0343 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 134 149 IPR002130 GO:0000413|GO:0003755
Glsi08g0343 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 91 103 IPR002130 GO:0000413|GO:0003755
Glsi08g0343 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 55 70 IPR002130 GO:0000413|GO:0003755
Glsi08g0343 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 149 161 IPR002130 GO:0000413|GO:0003755
Glsi08g0343 204 CDD cyclophilin_ABH_like 35 200 - -
Glsi08g0343 204 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 86 103 IPR020892 GO:0003755|GO:0006457
Glsi08g0343 204 Gene3D - 22 203 IPR029000 -
Glsi08g0343 204 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 39 199 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0343 Glsi-ChrGlsi08 3006259 3008749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0343 49 181 U-box Gene Family AT5G67530 46.269 7.35e-29 110