Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0328 ATGGGAAAGTTGTCGTTTCATGAATCTCTAAAAGCTCTGGAAGCTGATATTCACCATGCCAATACTCTGGCACTAAGTTATCCAAGGGATAAAGATGAAGCATGCTTTCAGATGAGACTATCATACAGTCCAGTGGCCCCCTTTTTCCTTTTTCTCATTCAATGGGCGGATTACCACCTGGCTGGTGCTTTGGGATTGCTGAGAATTCTGATTTATATGACCTACGGAGATGGGAAGACCACCGTGTCAATATATGAAAGGAAAGCAAGCATTAGAGAGTTTAACTCGGTGATATTTCCTGCTTTATTGCAACTTCAGAAAGGCATCACAGACTTGGAGGAAAGGAAACAGAAAGAAGTACATGCTATTAGATATCAAAGGAAGGAAGAGCAATCTAAAGTTGACATAGAAAGAGAAGAGGAATGTGGAATTTGCTTGGAGGTGAAGCCAAAAGTTGTGCTGCCTAATTGCTGCCATTGTATGTGTTTGAAGTGCTTCAGGGATTGGCATGGGAGATCCGGGTCTTGCCCCTTTTGCCGGGCTAATCTAAAGAGAGTCAACTCAGGTGACCTTTGGATTTACACAGATATTTGTGACACTCTGGATTTTGGGACGATTTTCAAAGAAAATCGTAAGAGGCTGTTTTTGTACATAGAGAAGTTGCCTCTTGTTACTCCAGACGCCATGTATGCCTCCTATGAACCATGTATGAGGTGA 717 0.424 MGKLSFHESLKALEADIHHANTLALSYPRDKDEACFQMRLSYSPVAPFFLFLIQWADYHLAGALGLLRILIYMTYGDGKTTVSIYERKASIREFNSVIFPALLQLQKGITDLEERKQKEVHAIRYQRKEEQSKVDIEREEECGICLEVKPKVVLPNCCHCMCLKCFRDWHGRSGSCPFCRANLKRVNSGDLWIYTDICDTLDFGTIFKENRKRLFLYIEKLPLVTPDAMYASYEPCMR 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0328 238 PANTHER RING FINGER PROTEIN 41, 151 5 232 - -
Glsi08g0328 238 SMART ring_2 142 179 IPR001841 -
Glsi08g0328 238 SUPERFAMILY RING/U-box 130 185 - -
Glsi08g0328 238 Pfam Zinc finger, C3HC4 type (RING finger) 139 186 - -
Glsi08g0328 238 FunFam RING/U-box superfamily protein 123 189 - -
Glsi08g0328 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 189 IPR013083 -
Glsi08g0328 238 ProSiteProfiles Zinc finger RING-type profile. 142 180 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0328 Glsi-ChrGlsi08 2913088 2916098 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0328 104 203 C3H Transcription Factor Family AT5G01960 31.000 3.55e-07 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0328 08 2913088 2916098 Glsi08g0328 08 2913088 2916098 ECH