Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0319 ATGGAAGCCAAGGTAGGAGGAGGTGGAAACATGAAGGGCATGGCCAACAATTCCATGCATCGATCATCAGGCCCACCGTTGACAGCCATAGACAGATTCTTATGGGGCCAACTCAGCCACTTCACTATGCAACAGCCAGAAAACGACGTGGTTGCAAAGAACATTATTACTGATACAACAAGAAGCTTCCTGGGTTGTTCTGATGGTGCAAGTGCAACCTATAGGTTTCTGTGGCCTAAGTGTGATGATCATGACGCTGCAAGTTTCATTGATGGGTTTTTAGCAAATGAAGAGGCTTTCCAATTCCCTACCTTGTCCCTTAAAAATGATGTGCAAGTTCCAGGGGATAAGAATGGTAAAGTGATGGGAAGAAGAGCTAAGAAAGCTGGGTCTTCTGTTTCTTTGATCAAAGGACAATGGACTGAGGAAGAGGATAGGAAACTGGTGAGGTTGGTAAAGCAATATGGTGTGAGAAAATGGGCTCAAATAGCAGAGAATTTGGAGGGAAGAGCTGGGAAGCAGTGCCGAGAGAGATGGCATAATCATCTGCGTCCTGATATCAAGAAAGATAGCTGGAGTGAAGAAGAAGAGAGGATGTTAGTAGAAACCCATGTAAAGGTGGGAAATCGTTGGGCAGAAATAGCAAAACACATTCCAGGAAGAACAGAAAATGCTATAAAGAACCATTGGAATGCCACCAAAAGGAGGCAAAACTCAAGGAGAAAGCACAAAAAGACCACAGAAAGCTCAAATAATGGATCAAAGCCACCACAGTCTTCTATACTTCAAGACTATATCAGAAGCAAGACACTTAGCATCACCCCAGAAAACCCATTAAAACTTGCGCTCTCAGAACCCTCCGATCAATCTATCAACAATGACACTTCATCCCCACCACTGATTGCCGAGCCATTTGATGATGAACTCCTCTTCATGCAACAATTTTTCTCAGAGAATCAGAATCAGCAAACACTTGTCAATATTGTTGAATCTGAATCTACTGTTAAGCACTCTAAGAATTCTTCAACATCCTTCTCCTTCGATTATTATCAAAGAGATGGTGGTCATGATCAGCGAGTGACTGAATGTGGATATGTCAATTCCAATCCAAACCCAGATAATTACAAGTACTTGGATGAGAGTCTCATGATTCCCAATAATAAACACCACCATCATTCTGATCTGTATCTCTCCCACTTGTTGAATGGAGCTGCAAATTCATCTTTTTGCTGTGACTACGGAAATCAAAACCTGAATATGGGTTTGCAGGAGGTGGGGGATGAGCAAGCTTGGCCAGAAGAAAAGAGAGAGATGGATTTGATAGAGTTGGTTTCTTCTTCTCAGTTTTCTACTACTAGCAGTAACAGAAGCTTCTAA 1377 0.4234 MEAKVGGGGNMKGMANNSMHRSSGPPLTAIDRFLWGQLSHFTMQQPENDVVAKNIITDTTRSFLGCSDGASATYRFLWPKCDDHDAASFIDGFLANEEAFQFPTLSLKNDVQVPGDKNGKVMGRRAKKAGSSVSLIKGQWTEEEDRKLVRLVKQYGVRKWAQIAENLEGRAGKQCRERWHNHLRPDIKKDSWSEEEERMLVETHVKVGNRWAEIAKHIPGRTENAIKNHWNATKRRQNSRRKHKKTTESSNNGSKPPQSSILQDYIRSKTLSITPENPLKLALSEPSDQSINNDTSSPPLIAEPFDDELLFMQQFFSENQNQQTLVNIVESESTVKHSKNSSTSFSFDYYQRDGGHDQRVTECGYVNSNPNPDNYKYLDESLMIPNNKHHHHSDLYLSHLLNGAANSSFCCDYGNQNLNMGLQEVGDEQAWPEEKREMDLIELVSSSQFSTTSSNRSF 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0319 458 SMART sant 188 236 IPR001005 -
Glsi08g0319 458 SMART sant 136 185 IPR001005 -
Glsi08g0319 458 Gene3D - 136 188 - -
Glsi08g0319 458 Gene3D - 190 260 - -
Glsi08g0319 458 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 132 187 IPR017930 -
Glsi08g0319 458 MobiDBLite consensus disorder prediction 1 22 - -
Glsi08g0319 458 PANTHER MYB PROTEIN-RELATED 137 258 - -
Glsi08g0319 458 SUPERFAMILY Homeodomain-like 134 230 IPR009057 -
Glsi08g0319 458 CDD SANT 191 234 IPR001005 -
Glsi08g0319 458 Pfam Myb-like DNA-binding domain 140 200 - -
Glsi08g0319 458 ProSiteProfiles Myb-like domain profile. 184 234 IPR001005 -
Glsi08g0319 458 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 188 238 IPR017930 -
Glsi08g0319 458 FunFam Transcriptional activator Myb isoform A 136 189 - -
Glsi08g0319 458 ProSiteProfiles Myb-like domain profile. 132 183 IPR001005 -
Glsi08g0319 458 MobiDBLite consensus disorder prediction 220 261 - -
Glsi08g0319 458 CDD SANT 140 183 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0319 Glsi-ChrGlsi08 2857380 2859471 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0319 14 447 MYB Transcription Factor Family AT5G58850 38.901 2.94e-87 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi08g0319 Myb_DNA-bind_6 5.3e-20 CL0123