Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0317 ATGGCAACCATCGCCACTTTTTTCGGCAAGTTCCTCTCTCTTTTCATCCTTCTTGTCCACCTTGGTTGCTTCATGTTCTCCACCACCCCCGGCGACGGAGGTGAAGGAGGACAAGACAATCACAAGCCACCGTCAAAGAAACGCAAAGTCTCTCCTGTCTCGCATTCACAACCCTCTCCTTCCCATCCCAAATTCAAAACCCATAAGGCCATTTCTTCTTCTTGGACTTTCATCAAACACCTCTTCTCCCCCAAATCTTGCAAAACCAGCAACGCCGCCCAAGCATCGCCGCAATCCTCCACCGCCACTACCGCCGCCGCCGCCGCCCCATCTACATTAACCTCTGCCAGATCCTCCCAGCAGTCCCTATTCTCTCTCGCGCAACCCGAATCGCAGTTATTGGATCCTCCACGCAAGAAACCATCCGGGTCTTGCCCAGAATCCGATATCTCCGCCGATAACAACCATTTCTTCCCCCTCCGCAACGATATCTTCCCCTGCACCGCTTGTGGCGAGATTTTCCAGAATCCCCATGCTCTCGAACAGCACCAGGCTCTCAAACACGCAGTTTCGGAGCTCGTAGAGACAGATGCGGGTCACAACATAGTCCGGATAATATTCAAGTCGGGTTGGACGAATACCCAGAAATGCCCCAAAATAAATCGGATACTAAAGATCCATAACAGCCCGAAGATACTTTCCAAGTTCGAAGAATACAGAGAAACGGTGAAGGCCAAGGCCGCCCGAAACGGCGCCGTAAAGAAACGGGACGAGAGGTGTATAGCCGATGGCAACGAGCTGATGAGGTTCCACTGCTCCACTTTCCTCTGCGATTTGGGACTGAACGGGGATTCCGGCATTTGTAGCCAGCAATATTGTAACATCTGCGGGATCATCAAATCGGGGTTCTCACCCAAGTTGGACGGAATCTCCACGCTATCCACGAGCTGGAGGGCACACGTGGCCATCCCGGACGAAGTGGAGGAGGAGTTCAAGTTCATGAACGTAAAGCGGGCCATGCTGGTGTGCCGAGTCATCGCGGGTCGGATCGGTTGCGATTCGGACGAAGCGGACAAAGAAGACGGGGGTTTTGATTCGGTGATGGCTCGCGGAGGAAGTGGGGTTTATACCCGGTTGGACGAGGAGGAGCTGTTGGTGTTTAATCCTAGAGCCGTGCTCCCATGCTTTGTGATTGTGTATAGTGTGTGA 1209 0.531 MATIATFFGKFLSLFILLVHLGCFMFSTTPGDGGEGGQDNHKPPSKKRKVSPVSHSQPSPSHPKFKTHKAISSSWTFIKHLFSPKSCKTSNAAQASPQSSTATTAAAAAPSTLTSARSSQQSLFSLAQPESQLLDPPRKKPSGSCPESDISADNNHFFPLRNDIFPCTACGEIFQNPHALEQHQALKHAVSELVETDAGHNIVRIIFKSGWTNTQKCPKINRILKIHNSPKILSKFEEYRETVKAKAARNGAVKKRDERCIADGNELMRFHCSTFLCDLGLNGDSGICSQQYCNICGIIKSGFSPKLDGISTLSTSWRAHVAIPDEVEEEFKFMNVKRAMLVCRVIAGRIGCDSDEADKEDGGFDSVMARGGSGVYTRLDEEELLVFNPRAVLPCFVIVYSV 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0317 402 Gene3D - 188 401 - -
Glsi08g0317 402 MobiDBLite consensus disorder prediction 50 68 - -
Glsi08g0317 402 ProSiteProfiles Zinc finger C2H2 type domain profile. 165 193 IPR013087 -
Glsi08g0317 402 ProSitePatterns Zinc finger C2H2 type domain signature. 167 188 IPR013087 -
Glsi08g0317 402 SUPERFAMILY ADP-ribosylation 190 401 - -
Glsi08g0317 402 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 73 400 - -
Glsi08g0317 402 MobiDBLite consensus disorder prediction 127 148 - -
Glsi08g0317 402 MobiDBLite consensus disorder prediction 32 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0317 Glsi-ChrGlsi08 2845638 2846846 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0317 75 402 C2H2 Transcription Factor Family AT2G29660 55.621 3.88e-113 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi08g0317 None None None