Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0306 ATGGAAATCCTATCACCTGCAGCACCATACATCACCAACCCCAACTGGCTTGTTGAAGAGAGCAAGAGCACAAAATGGACTCCAGCTGAGAACAAACTCTTCGAGAATGCTCTTGCAGTGTATGATAAGGACACCCCAGATCGGTGGCACCAAGTGGCTGCAAGGATACCGGGAAAAACAGTTGGGGACGTGATCAAGCAATACCAAGAACTTGAGCTTGATGTCAGTAATATAGAAGCTGGGTTGATCCCAATTCCTGGCTATAGTTCTCCCTCACCCTTCACCTTAGACTGGGTGAACACTCCTGGCTACGATAGCTTCAAAGGCCTCCCTGGAAAGAGATCCTCTTCAGGAAGACCTCCCGAGCATGAAAGGAAGAAAGGAGTTCCATGGACTGAAGAGGAGCATAAATTGTTTCTACTGGGACTGAAAAAGTATGGCAAAGGGGATTGGAGAAATATCTCTCGCAATTTCGTGGTGACTCGAACCCCAACTCAGGTGGCTAGCCATGCTCAGAAGTACTTCATCAGGCAGCTTTCAGGAGGGAAAGACAAGAGGAGAGCCAGCATCCATGACATAACAACAGTGAACCTCACAGAAACCAGCGGAAGAACACCTTCTCCACCGGAAGACTGCAGCAGCAACAGATCCACTTCACCGCAGCATCATAATCATCCCATGATGCTCTCACAGGCGCAGCAGCCAAATTCCAGTGCTAATAGAGGACACTTCCCGTGGAACCAGCCACTTGCAAGAGGAGCAGCCGTGGCTGCATCTCTCAATTCTGCCCCTGCACATGAGAAAGTGTTCATGTCTTGTCCTTATGGGGTTGACTCCTATGGCCTGAGTCTGCACAGAAATGCTGCTCTTCACGAATCTTCCTACTTGGGACCTCAGACCCAAAACATGGCTTTCCAATTGCAACCCACCCATCAACACTATTCCCATGCATGA 954 0.4927 MEILSPAAPYITNPNWLVEESKSTKWTPAENKLFENALAVYDKDTPDRWHQVAARIPGKTVGDVIKQYQELELDVSNIEAGLIPIPGYSSPSPFTLDWVNTPGYDSFKGLPGKRSSSGRPPEHERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETSGRTPSPPEDCSSNRSTSPQHHNHPMMLSQAQQPNSSANRGHFPWNQPLARGAAVAASLNSAPAHEKVFMSCPYGVDSYGLSLHRNAALHESSYLGPQTQNMAFQLQPTHQHYSHA 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0306 317 SMART sant 127 177 IPR001005 -
Glsi08g0306 317 SMART sant 22 74 IPR001005 -
Glsi08g0306 317 MobiDBLite consensus disorder prediction 109 130 - -
Glsi08g0306 317 FunFam transcription factor MYB1R1 129 180 - -
Glsi08g0306 317 NCBIfam myb-like DNA-binding domain, SHAQKYF class 126 178 IPR006447 GO:0003677
Glsi08g0306 317 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 20 240 IPR043363 -
Glsi08g0306 317 CDD SANT 130 175 IPR001005 -
Glsi08g0306 317 SUPERFAMILY Homeodomain-like 125 178 IPR009057 -
Glsi08g0306 317 CDD SANT 25 71 IPR001005 -
Glsi08g0306 317 MobiDBLite consensus disorder prediction 186 242 - -
Glsi08g0306 317 Gene3D - 18 85 - -
Glsi08g0306 317 Pfam Myb-like DNA-binding domain 130 175 IPR001005 -
Glsi08g0306 317 MobiDBLite consensus disorder prediction 192 242 - -
Glsi08g0306 317 ProSiteProfiles Myb-like domain profile. 123 175 IPR001005 -
Glsi08g0306 317 ProSiteProfiles SANT domain profile. 131 179 IPR017884 -
Glsi08g0306 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 123 179 IPR017930 -
Glsi08g0306 317 SUPERFAMILY Homeodomain-like 21 71 IPR009057 -
Glsi08g0306 317 FunFam Transcription factor SRM1 18 85 - -
Glsi08g0306 317 Gene3D - 129 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0306 Glsi-ChrGlsi08 2775268 2776552 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi08g0306 Myb_DNA-binding 1.5e-12 CL0123