LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi08g0298	ATGAAGAAATCACCACCAGACACGGATTTGCTTCATTCAAGCCAAAGAAAGAAACAGAATGGAGACAATGGCTCAAAGGCGCACGATCATAGGACTCATTCTGCTCTAAAACATTTTCAATCTGCTGTTAAGAAATTTGCAGATTCGACGGATTTATCATCTGAGAGTAACAACAAGAGTTCGTCAAAATGGAAGTTTTCTTATTCCTACGCATCATCTAGCACCACAAGTGGACAACTTGGAATGGGCAACTTCTCCTTTGGAGAAATTTACAAGGCAACAGGGAAATTTTCTCCAGATAATCAGATTGGGGAAGGTGGGTTTGGAACTGTGTATAGGGGGAGGCTCAATGATGGATCTCTTGTTGCCATAAAGCGGGCGAAGAAGAATGTTCAAGACAAGAACTTATCTGAGTTCAAGAATGAAATATACACCTTGTCAAAGATTGAGCATCTGAATCTTGTGAGGTTGTATGGATATATGGAGCATGAAGATGAAAAGATTATTGTTGTTGAATATGTTGGCAATGGAACACTTAGAGAACATCTAGATGGTACATTGGGAGATGGACTAGAAATCGGTGAGCGCCTAGACATAGCAATTGACGTAGCTCATGCAGTTACCTACCTTCATATGTACACAGATCGTCCAATAATCCATAGAGACATCAAAGCATCCAACATATTAATCACAGAGAAACTAAGGGCCAAAGTGGCAGACTTTGGATTTGCGCGTTTGGCTTCGGATGACCCGGCTGCAACCCATATTTCAACTCAAATTAAAGGAACAGCTGGCTACTTGGATCCTGAGTATTTGAGAACATATCAACTCACTGATAAGAGTGATGTTTATTCCTTTGGCGTTTTGCTTGTAGAAATGATGACAGGAAGACATCCCATAGAACCAAAGAGACCTATCAGTGAGAGGGTGACAATCAGATGGGCGATGCAGATGCTGAAACAAGGAGATACTGTCGTTGCCACAGACCCGAGGCTACGGAGAAGTCCGGCCTCAAACATGGCAGTGGAGAAGGTTCTCAAGCTAGCCTACCAATGCCTTGCACCTTTGAGACAATCAAGGCCTTCCATGAAGAGTTGTGCAGAGGTTCTATGGGGAATTCGTAAAGAGTTTAAAGATGAAGCCTTGTCTCAACCCCCACTTGTTTCTCACCATTCTGCAGATTTTCCTCGTAGTGATGCGAGGACACATATGTCATTTGATATTGGAGAGGATGACAGCTATAGATTCGTTTCTGCATAA	1260	0.4246	MKKSPPDTDLLHSSQRKKQNGDNGSKAHDHRTHSALKHFQSAVKKFADSTDLSSESNNKSSSKWKFSYSYASSSTTSGQLGMGNFSFGEIYKATGKFSPDNQIGEGGFGTVYRGRLNDGSLVAIKRAKKNVQDKNLSEFKNEIYTLSKIEHLNLVRLYGYMEHEDEKIIVVEYVGNGTLREHLDGTLGDGLEIGERLDIAIDVAHAVTYLHMYTDRPIIHRDIKASNILITEKLRAKVADFGFARLASDDPAATHISTQIKGTAGYLDPEYLRTYQLTDKSDVYSFGVLLVEMMTGRHPIEPKRPISERVTIRWAMQMLKQGDTVVATDPRLRRSPASNMAVEKVLKLAYQCLAPLRQSRPSMKSCAEVLWGIRKEFKDEALSQPPLVSHHSADFPRSDARTHMSFDIGEDDSYRFVSA	419

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi08g0298	419	FunFam	Calmodulin-binding receptor-like cytoplasmic kinase 1	61	173	-	-
	Glsi08g0298	419	Pfam	Protein tyrosine and serine/threonine kinase	100	370	IPR001245	GO:0004672\|GO:0006468
	Glsi08g0298	419	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	218	230	IPR008271	GO:0004672\|GO:0006468
	Glsi08g0298	419	Gene3D	Phosphorylase Kinase; domain 1	56	173	-	-
	Glsi08g0298	419	MobiDBLite	consensus disorder prediction	1	36	-	-
	Glsi08g0298	419	FunFam	Calmodulin-binding receptor-like cytoplasmic kinase 3	174	384	-	-
	Glsi08g0298	419	ProSitePatterns	Protein kinases ATP-binding region signature.	103	129	IPR017441	GO:0005524
	Glsi08g0298	419	ProSiteProfiles	Protein kinase domain profile.	97	377	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi08g0298	419	SUPERFAMILY	Protein kinase-like (PK-like)	76	373	IPR011009	-
	Glsi08g0298	419	PANTHER	OS01G0750732 PROTEIN	37	378	-	-
	Glsi08g0298	419	Gene3D	Transferase(Phosphotransferase) domain 1	174	388	-	-
	Glsi08g0298	419	SMART	serkin_6	97	370	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi08g0298	419	MobiDBLite	consensus disorder prediction	1	40	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi08g0298	Glsi-ChrGlsi08	2728472	2732543	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi08g0298	85	373	Receptor kinase-like Gene Family	AT1G30570	45.017	1.44e-68	231

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IV	Glsi08g0298		PK_Tyr_Ser-Thr	1.3e-51	CL0016