Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0290 ATGATGTCATATTCCAGAAGATCAAGGTATTCTCGTTCTCCTTCCCCATATAAGCGTTATGGTAGATCTGCTTCCAGGTCTCTGTCAAGGTCTAGATCCAGAAGCCTGTTAAGGAGCCCATCAAGAGATGCTGAGAATCCTGGTAACAATCTGTATGTGACAGGGTTGTCTCCTCGGATCACGAAGAGAGAACTGGAGAAGCATTTTGCATCTGAGGGAAAAGTAATAGATGTTCATCTAGTTGTTGATCCTTGGACGAGAGAATCGCGTGGGTTTGGATTTGTGACTATGGAAACTCTTGAGGAGGCTGACCAATGCATAAAGTATCTGAATCGCTCTGTTCTTGAAGGGCGTGTCATCACAGTAGAGAAGTTTCTGTGGCAGCAGGTTAGCTGTGTGTAG 402 0.4502 MMSYSRRSRYSRSPSPYKRYGRSASRSLSRSRSRSLLRSPSRDAENPGNNLYVTGLSPRITKRELEKHFASEGKVIDVHLVVDPWTRESRGFGFVTMETLEEADQCIKYLNRSVLEGRVITVEKFLWQQVSCV 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0290 133 MobiDBLite consensus disorder prediction 1 53 - -
Glsi08g0290 133 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 123 IPR000504 GO:0003723
Glsi08g0290 133 SUPERFAMILY RNA-binding domain, RBD 18 124 IPR035979 GO:0003676
Glsi08g0290 133 Gene3D - 3 126 IPR012677 -
Glsi08g0290 133 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 120 IPR000504 GO:0003723
Glsi08g0290 133 MobiDBLite consensus disorder prediction 18 53 - -
Glsi08g0290 133 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 45 124 - -
Glsi08g0290 133 SMART rrm1_1 50 123 IPR000504 GO:0003723
Glsi08g0290 133 FunFam Serine/arginine-rich splicing factor SR45a 3 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0290 Glsi-ChrGlsi08 2688177 2689979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0290 50 122 Eukaryotic Initiation Factors Gene Family AT2G36660 34.247 1.08e-08 50.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0290 08 2688177 2689979 Glsi08g0290 08 2688177 2689979 ECH