Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0263 ATGGCTGGCGCAAATGCATCCAATTCATCCTCACTGGAATGCCCTAATGGTGATTCTGAATCTAATGAAGGCCAATCTTTGTCCAATAGTGGATTGAATGAGGAAGATGATGATGCCACTAAAGAATCACAAGCAACTGCTCCTAATCAGTCAGGAAATTACGTTCAAGAACACCAAGGGATGCAGCATGTTTCATCAGCTGCACCTTCCATGCGAGATGACTGCCTTACCCAGACGCCTCAGCTTGAACTTGTTGGTCACTCAATTGCGTGTGCTTCAAATCCTTATCAGGATCCATATTATGGGGGAATGATGGCAGCTTATGGACACCATCAGCTGGGATATCCCCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCTCTTGAGATGGCACAAGAGCCTGTTTATGTGAATGCCAAACAATACCAGGCCATTCTCAGGCGAAGACAGGCTCGTGCTAAAGCAGAGCTTGAAAAGAAGCTAATAAAAGTTAGAAAGCCATATCTTCATGAATCTCGGCACCAGCATGCTATGAGAAGGGCGAGGGGTACCGGAGGACGCTTTGCAAAGAAAACTGGTGCTGAGGCCGAAGGCAAGGAAAAGGATATGGGATCTGGTCCAGTCCGATCGTCACAATCAATTAGTTCTTCTGGTTCTGAACCTTTAGCCTCTGAGTCTGCAGAAACCTGGAACTCCCCTAATGTGCAACAAGATGCTAGAGGATATAAAGATTCTGACAGATACGAAGCACACAACTATGCAAATAGTAGTGGCTCATACCACAATCATAGTGGTATGCAACCTTCCTCTTATCATTTGCACTCGGGTGAAAGAGTGGAGGAAGGTGACTGTTCAGGGCAGCAACGGGGGAGTATCTCTTCTGAGCACACTTCACAGAGGCGTCTTGCAATTCAGTAG 924 0.4643 MAGANASNSSSLECPNGDSESNEGQSLSNSGLNEEDDDATKESQATAPNQSGNYVQEHQGMQHVSSAAPSMRDDCLTQTPQLELVGHSIACASNPYQDPYYGGMMAAYGHHQLGYPPFIGMPHARMPLPLEMAQEPVYVNAKQYQAILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKTGAEAEGKEKDMGSGPVRSSQSISSSGSEPLASESAETWNSPNVQQDARGYKDSDRYEAHNYANSSGSYHNHSGMQPSSYHLHSGERVEEGDCSGQQRGSISSEHTSQRRLAIQ 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0263 307 MobiDBLite consensus disorder prediction 171 188 - -
Glsi08g0263 307 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 135 190 IPR001289 GO:0003700|GO:0006355
Glsi08g0263 307 MobiDBLite consensus disorder prediction 43 72 - -
Glsi08g0263 307 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 11 247 IPR001289 GO:0003700|GO:0006355
Glsi08g0263 307 MobiDBLite consensus disorder prediction 208 241 - -
Glsi08g0263 307 ProSiteProfiles NF-YA/HAP2 family profile. 133 193 IPR001289 GO:0003700|GO:0006355
Glsi08g0263 307 ProSitePatterns NF-YA/HAP2 subunit signature. 138 158 IPR018362 GO:0003677|GO:0016602
Glsi08g0263 307 SMART cbf3 132 193 IPR001289 GO:0003700|GO:0006355
Glsi08g0263 307 MobiDBLite consensus disorder prediction 1 33 - -
Glsi08g0263 307 MobiDBLite consensus disorder prediction 171 307 - -
Glsi08g0263 307 MobiDBLite consensus disorder prediction 288 307 - -
Glsi08g0263 307 Gene3D - 133 195 - -
Glsi08g0263 307 MobiDBLite consensus disorder prediction 253 273 - -
Glsi08g0263 307 PRINTS CCAAT-binding transcription factor subunit B signature 136 158 IPR001289 GO:0003700|GO:0006355
Glsi08g0263 307 PRINTS CCAAT-binding transcription factor subunit B signature 167 190 IPR001289 GO:0003700|GO:0006355
Glsi08g0263 307 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0263 Glsi-ChrGlsi08 2481731 2485806 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0263 2 307 CCAAT-HAP2 Transcription Factor Family AT3G20910 50.804 6.15e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Glsi08g0263 CBFB_NFYA 6.9e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0263 08 2481731 2485806 Glsi08g0263 08 2481731 2485806 ECH