Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0258 ATGGTTTCGTGTGGAGTGGAGAAAGGTGGTTTTGTTTGTATGGGTCGTATTCCATGCTGTGAGAAGGACAACGTGAAAAGAGGACAGTGGACACCTGAGGAAGATAACAAGCTCTCTTCCTACATTGCTCAACATGGTACCAGGAACTGGCGCCTCATCCCTAAGCATGCTGGCCTCCAAAGATGTGGAAAGAGCTGCAGGCTACGGTGGACTAATTACCTTCGACCTGATCTGAAACACGGTCAATTCTCAGACGCAGAAGAGCAAACCATTGTGAAGCTTCACTCCGTTTTTGGTAACCGATGGTCACTGATAGCAGCCCAGCTGCGGGGGCGCACCGACAATGATGTCAAAAATCACTGGAATACCAAGCTGAAAAAGAAGCTTTCGGGTATGGGTATTGACCCTGTCACCCACAAGCCATTCTCCTACCTAATGGCTGAAATTGCAACGACATTGTCACCCCCACAGGCAGCTCACCTTGCAGAAGCAGCCCTAGGCTGCTTCAAAGATGAGGTTCTCCACCTTCTTACTAAAAAGAAGATTAACTTCCAGGCACAACACCCCGCTGCAGCACTGGGGAATAACATTACCAACTTCATTGACTGTGAACCTGATGAAAAGGATGACACTAATGATAATATTAAGTTTGGCCTATCGAAAGCCATACAAGAACCAGAAATGATACCCTCAAGGAAACCTTGGGACTGCACTGCAGCTATGTCTGCAAGTTTTGCAGGGAATTGCAGTGTTTTCCCTTCAACATCTGGGTTTCAATTTAGACCGGCGTCTTTTGTCAATGAAGGGGATGGATCACCATGGAGCCAGAGTGTATGTACCGGAAGCACATGCACAGCCATGGATCAGCAAGGCCAGTTACATGAAAAACTTAAGGAAGAAAATGAAGACGGGTCTGATACTGCAAAAGTAATTAGCAATGGATCCAATTTATTCAACTCAGATTGTGTTTTGTGGGATTTACCATCAGATGATCTAATTAATCCCATGGTATAA 1014 0.4576 MVSCGVEKGGFVCMGRIPCCEKDNVKRGQWTPEEDNKLSSYIAQHGTRNWRLIPKHAGLQRCGKSCRLRWTNYLRPDLKHGQFSDAEEQTIVKLHSVFGNRWSLIAAQLRGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSYLMAEIATTLSPPQAAHLAEAALGCFKDEVLHLLTKKKINFQAQHPAAALGNNITNFIDCEPDEKDDTNDNIKFGLSKAIQEPEMIPSRKPWDCTAAMSASFAGNCSVFPSTSGFQFRPASFVNEGDGSPWSQSVCTGSTCTAMDQQGQLHEKLKEENEDGSDTAKVISNGSNLFNSDCVLWDLPSDDLINPMV 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0258 337 PANTHER F14D16.11-RELATED 14 335 - -
Glsi08g0258 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 129 IPR017930 -
Glsi08g0258 337 CDD SANT 30 74 IPR001005 -
Glsi08g0258 337 SMART sant 26 76 IPR001005 -
Glsi08g0258 337 SMART sant 79 127 IPR001005 -
Glsi08g0258 337 Gene3D - 81 140 - -
Glsi08g0258 337 FunFam Transcription factor RAX3 20 80 - -
Glsi08g0258 337 Pfam Myb-like DNA-binding domain 81 123 IPR001005 -
Glsi08g0258 337 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Glsi08g0258 337 SUPERFAMILY Homeodomain-like 24 121 IPR009057 -
Glsi08g0258 337 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Glsi08g0258 337 Gene3D - 27 79 - -
Glsi08g0258 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 78 IPR017930 -
Glsi08g0258 337 CDD SANT 83 125 IPR001005 -
Glsi08g0258 337 FunFam transcription factor MYB80 82 142 - -
Glsi08g0258 337 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0258 Glsi-ChrGlsi08 2436020 2437681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0258 14 184 MYB Transcription Factor Family AT5G56110 88.304 3.27e-113 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi08g0258 Myb_DNA-binding 3e-16 CL0123