Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0251 ATGTCTGGAACCCTCAATCTCACTCTCCCCGCCGTCCGGCCACTCCGATTCTCCTCTGACGACTGTTTAACCTCCACCGCCTCCTCCTCTGTCAGGTTCCTCAGGCGGCCGAGTGCGGACTCCGGAACCCAATGTAGGGCCTCGATCCGGTCCTCTTTCGCGACGAAGACCGACTCGCGCGCGATCGGATCCCGACAGCCGGCGAGCCTTTACGAGGTGCTCCGAGTCAACCAGAACGCATCCCCAACGGAGATCAAGTCGGCTTATCGGAGTTTGGCTAAAATCTACCATCCCGATTCGGCGGTGCAACGATCGGAACCCGACGGCAAGGACTTCATTGAGATCCACAACGCCTACGCGACGCTGTCGGATCCATCGGCGAGAGCACTCTATGATCTTTCCTTGATGGCTGTTCATGGGAGGAGGCGCCCATTTTCGTCTCCGGTTCAGGATGGCTGTCCCGGGTTTTACGCGACCCGGAGATGGGAGACGGACCAATGTTGGTAG 507 0.5917 MSGTLNLTLPAVRPLRFSSDDCLTSTASSSVRFLRRPSADSGTQCRASIRSSFATKTDSRAIGSRQPASLYEVLRVNQNASPTEIKSAYRSLAKIYHPDSAVQRSEPDGKDFIEIHNAYATLSDPSARALYDLSLMAVHGRRRPFSSPVQDGCPGFYATRRWETDQCW 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0251 168 ProSitePatterns Nt-dnaJ domain signature. 112 131 IPR018253 -
Glsi08g0251 168 Gene3D DnaJ domain 54 145 IPR036869 -
Glsi08g0251 168 PRINTS DnaJ domain signature 107 127 IPR001623 -
Glsi08g0251 168 PRINTS DnaJ domain signature 89 104 IPR001623 -
Glsi08g0251 168 PRINTS DnaJ domain signature 71 89 IPR001623 -
Glsi08g0251 168 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 6 168 - -
Glsi08g0251 168 Pfam DnaJ domain 70 132 IPR001623 -
Glsi08g0251 168 CDD DnaJ 71 124 IPR001623 -
Glsi08g0251 168 SMART dnaj_3 68 127 IPR001623 -
Glsi08g0251 168 SUPERFAMILY Chaperone J-domain 68 145 IPR036869 -
Glsi08g0251 168 ProSiteProfiles dnaJ domain profile. 69 135 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0251 Glsi-ChrGlsi08 2383872 2384378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0251 71 132 C2H2 Transcription Factor Family AT1G74250 46.970 6.80e-09 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0251 08 2383872 2384378 Glsi08g0251 08 2383872 2384378 ECH