Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0248 ATGACTGCCGACGAACAAATTATTACTTTGGATGTCGATCCCCATGAATCTGTGGAAAACGTCAAAGCATTGCTTGAGGTAGAGACACAAGTGCCTCTTCAGCAACAGCAACTTCTCTATAACGGAAGGGAGATGGAGAATTTTGAGAAATTGAGTGCACTTGGTGTTAAAGATGAAGATTTGCTGATGATGGTCGCTGCTGCTGCTGCTGCTTCTGGTGCATCTGCCAATGATTTGGGCTTCAATTCTGATGGATCTGCTGTTAACCCTGCCGCTTTCCAGCAGCACATTAGACGTGATTCTAACCTGTTGGGTCAGATCTTTCAGAATGATCCAGAGTTGGCACAAGCTATTCTAGGACATGATCTTGATAGCTTACAGGAGATATTACGAATGCGTCATCGCCATAAAGCTGAATTACAGCGTCAAAAAGATGAGGAACTTGCTCTTCTTTATGCAGATCCTTTTGATGTTGAAGCACAAAAAAAGATTGAAGCTGCCATTCGCCAGAAAGGAATTGATGAAAACTGGGCCGCTGCACTAGAGCATAATCCTGAAGCCTTTGCAAGAGTGGTCATGTTGTATGTTGATATGGAGGTTAATGGTGTCCCACTGAAGGCATTTGTTGATAGTGGAGCCCAGTCTACCATTATATCAAAAAGTTGTGCTGAGCGTTGTGGATTGTTGAGACTTTTAGATCAGCGTTACAAGGGAATTGCTCATGGAGTTGGCCAATCAGAGATATTGGGTCGAATACATGTAGCTCCAATCAAGATTGGGAATATATTCTACCCTTGCTCATTCCTAGTGCTGGATTCTCCTAATATGGAGTTCCTCTTTGGGCTAGATATGCTCCGAAAGCACCAGTGCATTATAGATTTAAAAGACAATGTTTTGCGAGTAGGTGGAGGAGAAGTTTCTGTGCCATTTTTGCATGAGAAAGACATACCAACTCGGTTTCTTGATGAAGAGAGGTATTCTAAGGAAGCTTCCAGCTCTGGTGCCCTGGCAACAGGAACAACAGATCGGAGCAATGCTCCTAAAGGAGGTCAGTCTTCAGGAGGAGCTTCTGGCAGCATGGCTCAGGATGATTTCGAAGCCAAAGTTGCAAAGCTTGTTGAGTTAGGCTTTGAAAGACAAGCAGTTGTACAAGCTCTTGGATTGTTCAATGGCAATGAGGAGCAGGCAGCTGGGTTCCTTTTTGGGGGCTGA 1212 0.4422 MTADEQIITLDVDPHESVENVKALLEVETQVPLQQQQLLYNGREMENFEKLSALGVKDEDLLMMVAAAAAASGASANDLGFNSDGSAVNPAAFQQHIRRDSNLLGQIFQNDPELAQAILGHDLDSLQEILRMRHRHKAELQRQKDEELALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERCGLLRLLDQRYKGIAHGVGQSEILGRIHVAPIKIGNIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKDNVLRVGGGEVSVPFLHEKDIPTRFLDEERYSKEASSSGALATGTTDRSNAPKGGQSSGGASGSMAQDDFEAKVAKLVELGFERQAVVQALGLFNGNEEQAAGFLFGG 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0248 403 Gene3D - 335 403 - -
Glsi08g0248 403 Gene3D Acid Proteases 172 318 IPR021109 -
Glsi08g0248 403 ProSiteProfiles Ubiquitin domain profile. 1 71 IPR000626 GO:0005515
Glsi08g0248 403 Pfam UBA/TS-N domain 366 399 IPR015940 -
Glsi08g0248 403 PRINTS Ubiquitin signature 27 47 IPR019956 -
Glsi08g0248 403 PRINTS Ubiquitin signature 6 26 IPR019956 -
Glsi08g0248 403 MobiDBLite consensus disorder prediction 331 359 - -
Glsi08g0248 403 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 400 - -
Glsi08g0248 403 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 362 403 IPR015940 -
Glsi08g0248 403 FunFam DNA damage inducible 1 homolog 2 171 318 - -
Glsi08g0248 403 CDD UBA_scDdi1_like 366 401 - -
Glsi08g0248 403 CDD Ubl_Ddi1_like 4 65 IPR033882 -
Glsi08g0248 403 SMART ubq_7 2 67 IPR000626 GO:0005515
Glsi08g0248 403 Pfam Aspartyl protease 171 293 IPR019103 GO:0004190|GO:0006508
Glsi08g0248 403 SUPERFAMILY Acid proteases 179 294 IPR021109 -
Glsi08g0248 403 CDD RP_DDI 178 301 IPR019103 GO:0004190|GO:0006508
Glsi08g0248 403 Coils Coil 126 146 - -
Glsi08g0248 403 Gene3D - 1 78 - -
Glsi08g0248 403 SUPERFAMILY Ubiquitin-like 2 70 IPR029071 -
Glsi08g0248 403 SMART uba_6 365 402 IPR015940 -
Glsi08g0248 403 MobiDBLite consensus disorder prediction 331 360 - -
Glsi08g0248 403 Pfam Ubiquitin family 4 66 IPR000626 GO:0005515
Glsi08g0248 403 SUPERFAMILY UBA-like 357 403 IPR009060 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0248 6 65 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 7.76e-06 43.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0248 08 2353649 2362020 Glsi08g0248 08 2353649 2362020 ECH