Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0245 ATGAGCGATTCTGCTTACAGAGTCGAAACCACATCCCGTCTCGCCCAATGGAGAATCGAAAACCTCGCTTCCTGCACTTACCGCAAATCTGATCCTTTCAAGATCGGCAAGTGGAATTGGCACTTGTCCTTGGAGAAGAACCGGATTTTATTTATTAAATTATACCCAGAAATATCCAATCTAACCAGAGACAATCCCCCGATTGCATCTTTCGTCATTCGGGTCGTTAGTTCTGCTGGGGATCGCAAGGCCTTAACCCATCCAGGAGTAAAAGACAAACTGATCAAGAACAACGAAGACTTTGTTTGGGCAATTGAGGTTCCACTAACTGGGAAATTCATTATTGATGTTGAGTTCCTTGATTTGAAGACTGCATCCCCAAACGGTGGAGAACCTTGCTCCATCTGGGCTGAAGGATCTCCACAGAAAGGTTCAAATACAACAGCCCTTGAAGCTCTCAGCCGAATGCTAACAGGAGGCATCCACACAGACATCATGATCAATGCATCAGATGGAAGCATTGGAGCTCACCGAGCTGTTCTTGCTGCTCGGTCACCTGTCTTTGGCAGCATGTTTTCACACAACCTTAAGGAGAAGGAGCTATCTACCATAGATATCTCAGACATGTCACATGAAGCATGCCAGGCTTTTCTCAATTATCTTTACGGGAACATCAAACATGAAGAATTTCTGACACACAGGCTGGTCCTTCTGCATGCAGCTGATAAGTATGACATTTCTGACTTGAAAGAGGCATGCCATGAGAGTCTTCTGGAAGATATTGATGCAAAAAATGTACTTGAGAGGCTCCAAAATGCATATCTATATCAGTTACCGAAATTGAAGATTAGCTGTCTGCGATATCTTGTGAAATTTGGTAAAATATTCGACATTCGGGATGATTTCAATGCCTTCTTGCAATGTGCAGACAGGGATCTGATTGCTGAAGTCTTCCATGAAGTTCTCAATGCCTGGAAAGGGCTCTGA 987 0.4387 MSDSAYRVETTSRLAQWRIENLASCTYRKSDPFKIGKWNWHLSLEKNRILFIKLYPEISNLTRDNPPIASFVIRVVSSAGDRKALTHPGVKDKLIKNNEDFVWAIEVPLTGKFIIDVEFLDLKTASPNGGEPCSIWAEGSPQKGSNTTALEALSRMLTGGIHTDIMINASDGSIGAHRAVLAARSPVFGSMFSHNLKEKELSTIDISDMSHEACQAFLNYLYGNIKHEEFLTHRLVLLHAADKYDISDLKEACHESLLEDIDAKNVLERLQNAYLYQLPKLKISCLRYLVKFGKIFDIRDDFNAFLQCADRDLIAEVFHEVLNAWKGL 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0245 328 SUPERFAMILY POZ domain 147 259 IPR011333 -
Glsi08g0245 328 CDD BTB_POZ_ZBTB_KLHL-like 162 244 - -
Glsi08g0245 328 Pfam BTB/POZ domain 156 259 IPR000210 GO:0005515
Glsi08g0245 328 PANTHER OS08G0495500 PROTEIN-RELATED 5 327 IPR044714 -
Glsi08g0245 328 Gene3D Potassium Channel Kv1.1; Chain A 140 291 IPR011333 -
Glsi08g0245 328 SMART BTB_4 163 261 IPR000210 GO:0005515
Glsi08g0245 328 ProSiteProfiles BTB domain profile. 163 222 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0245 Glsi-ChrGlsi08 2178896 2180664 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Glsi08g0245 BTB 6.3e-22 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0245 08 2178896 2180664 Glsi10g2770 10 49955351 49963352 CCT
Glsi08g0245 08 2178896 2180664 Glsi08g0245 08 2178896 2180664 ECH