Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0234 ATGCCTGGAAGCTTAAGGAATCTATCATCACTTTCTCCCAAAATCTTCTCCTTCACCTTACTTCTCTTTTCAATCAACTCCCTTCTCTTCTCATGTTGTTACTCCATTAATGAGCAAGGCCAAGTTCTTCTGGCATGGAAGAACAGTTTCAACAATACTGCAGATGCATTAGCATCTTGGAAGCCTTCAGACGCAAGTCCATGCAATTGGTTTGGGGTGCACTGCAGCTCGAGAGGAGACGTGGTTGAGATAAACTTGAAATCTGTGGACTTGCAAGGCTCGCCATTGCCTTCAAATTTTCAATCTCTGAAGTCCTTGAAGGTTCTTGTCCTCTCATCAACCAACATCACAGGCAGAATTCCAAAGGAAATTGGAGACTATGAAGAGCTCATTTCTATTGATCTCAGTGGGAATTTTCTTCTGGGTGAAATCCCAGAAGAAATTTGCAGGCTAAGAAAACTTCAGAGTCTGTCTCTCCATACGAACTTTCTTGAAGGCAATATTCCATCCAGCATTGGAAATATCTCGAGTCTTGTGAATTTGACTCTCTATGATAACCAGCTCAGTGGTGAAATCCCAAAGAGTGTTGGATCCTTAAGCAAGCTCCAAGTGTTCAGAGCAGGAGGGAATAAGAACCTTAAGGGTGAGCTGCCATGGGAGATTGGAAACTGCACCAACTTGGTCATGTTAGGCCTTGCAGAAACCAGCATTTCTGGGATTCTTCCTTCTTCAATCGGAACGCTGAAGAAACTTCAAACCATAGCCATTTACACAGCTCTTTTGTCAGGCTCCATCCCAGAAGAAATTGGGAATTGCAGTGAGTTGCAGAACCTGTACTTGTACCAGAACTCTATCTCAGGTCCAATTCCAAGTCAAATTGGAAAGCTCAGAAAGCTTCAGAGTCTTCTTCTATGGCAAAACAGCATAGTAGGTACAATCCCAGAAGAGCTTGGAAGCTGCACAGAGATTAAAGTCATTGACTTTTCTGAAAATCTTCTCACAGGAAACATACCAAGGAGTTTCGGGCAGCTTTCAAATCTTCAGGGACTTCAGCTCAGTGTTAATCAGTTGTCAGGGACTATACCTCTGGAGATTTCAAATTGCACTTCTCTGACAGTATTGGAAGTTGACAACAACGCTCTCTCCGGTGAGATTCCTGCTCTTATTGGCAACTTGAGAAGCTTGACTCTGTTCTTTGCCTGGCAGAACAAGCTAACTGGAAAAATCCCAGAAAGTCTATCGGAGTGCCAAGATCTTCAGGCACTTGATCTGTCTTACAACAATTTGATTGGTTCAATACCCAAAGGGCTATTCGGGTTGAGAAATCTCACCAAGCTATTGCTTATTTCCAATAATTTATCAGGCTATGTTGCTCCTGATATAGGTAACTGCACAAGTCTCTACAGGTTAAGGTTGAACCACAATAGACTTGCAGGTACCATTCCTCCTGAGATTGGAAACCTGAAGAGCTTGAACTTCGTGGATTTGAGCAGCAACCATTTTGTAGGGGAGATACCCTCATCACTGTCTTCATGCCAAAACCTTATGTTTCTGGACCTTCATTCAAATAGTCTCACAGGTTCTCTTCCAGATTCTCTGCCCAGAAGCTTGCAGCTAATTGACTTCTCAGATAATAGGCTAACAGGTACACTGAGTCATACCATTGGTTCATTATCTGAACTAACCAAGCTCTATCTGGGGAAGAATCAGCTTAGTGGAAGAATCCCAAAAGAGATTTTATCCTGCACTAAGCTGCAACTTCTGGACTTGGGAAGGAATAGTTTCTCTGGGGTAATTCCCAAGGAAGTGGGTCAGATTCCTTCATTGGAAATCTCTCTGAATCTCAGTTGCAACCAGTTTTCTGGTGAAATCCCATTTCAGTTCTCTAGTCTTAGCAAACTAGGAGTGCTTGATCTCTCCCACAACAAGCTCTCCGGGAATTTAGATACCCTCTCTGGCCTTCAGAATCTTGTCTCCTTAAACGTCTCCTTCAATGACTTCTCCGGTGAATTGCCAAACACCCCATTCTTCAGAAAACTCCCTCTTAGTGATCTCACTGCAAATGAAGGTCTTTACATCGCCGGCGGTGTCATAACTCCGGGTGGTAGGGTGGGACCCAAGGTTCACCCCAGATCAGCCATGAAGGTCATAATGTCCATTCTCCTAACGACCAGTGCAGTACTGGTTCTACTCACAATCTATGCCTTGTTTCGTTCTCACATGGCAACCAGAGCAGCCATGGAAAATGAAAGTTGGGAGATGACTCTGTATCAGAAGCTTGAATTCTCCATTGATGACATTGTTAAGAACTTAACATCTTCCAATGTGATTGGCACTGGAAGCTCTGGGGTTGTGTACAGGGTAACAATCCCCAGTGGCGAAACACTGGCAGTGAAGAAAATGTGGTCATCAGAAGAATCTGGAGCATTTGATTCTGAGATTCAAACACTGGGTTCCATTAGACACAAGAACATCATAAGACTTCTGGGTTGGGGATCCAACAAGAGTCTGAAGCTGCTGTTCTATGATTACCTCCCAAATGGTAGCTTAAGCTCGATGCTTCATGGTTCAGGAAAGGGAGGAGCAGAGTGGGAGACCAGATACGAAGTTGTCTTAGGTGTGGCTCATGCTCTTGCTTATCTGCACCATGACTGTGTGCCTGCTATACTGCATGGAGATATCAAAGCCATGAACGTCCTATTGGGTCCTGGCTATCAACCTTACCTTGCTGACTTTGGCTTGGCAAGAATTGCAGATGAAAAGGGTGATAATTCTGATTCCAAGCCAGTTCAAAGACCTTATCTTGCTGGTTCCTATGGATACATGGCTCCAGAGCATGCATCGATGCAACGTTTAACTGAGAAGAGTGATGTGTATAGTTTCGGTGTGGTTATTCTTGAGGTCCTGACAGGGAGGCACCCATTAGACCCAACTCTACCTGGGGGTGCACATATGGTCCAGTGGGTTCGGAACCAATTGGCTAGCAAAGGTGACCCATCTGATATTCTTGACTCAAAGCTCAGAGGGAGGGCTGACCCTACTATGCATGAGATGCTTCAAACTCTAGCTGTATCGTTTCTATGTGTCAGCACTAGAGCTGATGAGCGTCCTACAATGAAGGACGTTGTTGCTATGCTCAAGGAAATTAGACCCGTTGAGGCCTCAAGGGCTGACCCTGATGTAATGAAGGGAAAATCACCATCAAGCTATCCTCCATCACCACTGCCTAAGAACCTAGTTTCAAATGAATCTTCTAACTGCTCCTTTAATTTCTCCGATGACTCAATCTATTGA 3294 0.4429 MPGSLRNLSSLSPKIFSFTLLLFSINSLLFSCCYSINEQGQVLLAWKNSFNNTADALASWKPSDASPCNWFGVHCSSRGDVVEINLKSVDLQGSPLPSNFQSLKSLKVLVLSSTNITGRIPKEIGDYEELISIDLSGNFLLGEIPEEICRLRKLQSLSLHTNFLEGNIPSSIGNISSLVNLTLYDNQLSGEIPKSVGSLSKLQVFRAGGNKNLKGELPWEIGNCTNLVMLGLAETSISGILPSSIGTLKKLQTIAIYTALLSGSIPEEIGNCSELQNLYLYQNSISGPIPSQIGKLRKLQSLLLWQNSIVGTIPEELGSCTEIKVIDFSENLLTGNIPRSFGQLSNLQGLQLSVNQLSGTIPLEISNCTSLTVLEVDNNALSGEIPALIGNLRSLTLFFAWQNKLTGKIPESLSECQDLQALDLSYNNLIGSIPKGLFGLRNLTKLLLISNNLSGYVAPDIGNCTSLYRLRLNHNRLAGTIPPEIGNLKSLNFVDLSSNHFVGEIPSSLSSCQNLMFLDLHSNSLTGSLPDSLPRSLQLIDFSDNRLTGTLSHTIGSLSELTKLYLGKNQLSGRIPKEILSCTKLQLLDLGRNSFSGVIPKEVGQIPSLEISLNLSCNQFSGEIPFQFSSLSKLGVLDLSHNKLSGNLDTLSGLQNLVSLNVSFNDFSGELPNTPFFRKLPLSDLTANEGLYIAGGVITPGGRVGPKVHPRSAMKVIMSILLTTSAVLVLLTIYALFRSHMATRAAMENESWEMTLYQKLEFSIDDIVKNLTSSNVIGTGSSGVVYRVTIPSGETLAVKKMWSSEESGAFDSEIQTLGSIRHKNIIRLLGWGSNKSLKLLFYDYLPNGSLSSMLHGSGKGGAEWETRYEVVLGVAHALAYLHHDCVPAILHGDIKAMNVLLGPGYQPYLADFGLARIADEKGDNSDSKPVQRPYLAGSYGYMAPEHASMQRLTEKSDVYSFGVVILEVLTGRHPLDPTLPGGAHMVQWVRNQLASKGDPSDILDSKLRGRADPTMHEMLQTLAVSFLCVSTRADERPTMKDVVAMLKEIRPVEASRADPDVMKGKSPSSYPPSPLPKNLVSNESSNCSFNFSDDSIY 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0234 1097 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Glsi08g0234 1097 SUPERFAMILY Protein kinase-like (PK-like) 758 1046 IPR011009 -
Glsi08g0234 1097 SMART LRR_typ_2 151 175 IPR003591 -
Glsi08g0234 1097 SMART LRR_typ_2 344 368 IPR003591 -
Glsi08g0234 1097 SMART LRR_typ_2 631 654 IPR003591 -
Glsi08g0234 1097 SMART LRR_typ_2 440 464 IPR003591 -
Glsi08g0234 1097 SMART LRR_typ_2 488 512 IPR003591 -
Glsi08g0234 1097 SMART LRR_typ_2 296 320 IPR003591 -
Glsi08g0234 1097 SMART LRR_typ_2 558 582 IPR003591 -
Glsi08g0234 1097 SMART LRR_typ_2 103 127 IPR003591 -
Glsi08g0234 1097 ProSitePatterns Serine/Threonine protein kinases active-site signature. 889 901 IPR008271 GO:0004672|GO:0006468
Glsi08g0234 1097 MobiDBLite consensus disorder prediction 1054 1084 - -
Glsi08g0234 1097 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 211 336 - -
Glsi08g0234 1097 PRINTS Leucine-rich repeat signature 631 644 - -
Glsi08g0234 1097 PRINTS Leucine-rich repeat signature 419 432 - -
Glsi08g0234 1097 Gene3D Ribonuclease Inhibitor 36 195 IPR032675 -
Glsi08g0234 1097 Pfam Protein kinase domain 774 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0234 1097 FunFam Leucine-rich receptor-like protein kinase family protein 339 611 - -
Glsi08g0234 1097 Gene3D Phosphorylase Kinase; domain 1 736 844 - -
Glsi08g0234 1097 ProSitePatterns Protein kinases ATP-binding region signature. 777 800 IPR017441 GO:0005524
Glsi08g0234 1097 FunFam Leucine-rich receptor-like protein kinase family protein 36 198 - -
Glsi08g0234 1097 SMART serkin_6 771 1027 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0234 1097 Gene3D Transferase(Phosphotransferase) domain 1 845 1063 - -
Glsi08g0234 1097 SUPERFAMILY L domain-like 133 530 - -
Glsi08g0234 1097 FunFam Putative LRR receptor-like serine/threonine-protein kinase 756 844 - -
Glsi08g0234 1097 ProSiteProfiles Leucine-rich repeat profile. 633 655 IPR001611 GO:0005515
Glsi08g0234 1097 SUPERFAMILY L domain-like 460 679 - -
Glsi08g0234 1097 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Glsi08g0234 1097 Gene3D Ribonuclease Inhibitor 196 406 IPR032675 -
Glsi08g0234 1097 Gene3D Ribonuclease Inhibitor 407 695 IPR032675 -
Glsi08g0234 1097 ProSiteProfiles Protein kinase domain profile. 771 1049 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0234 1097 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 495 1047 - -
Glsi08g0234 1097 Pfam Leucine rich repeat 612 667 IPR001611 GO:0005515
Glsi08g0234 1097 Pfam Leucine rich repeat 297 357 IPR001611 GO:0005515
Glsi08g0234 1097 FunFam Putative LRR receptor-like serine/threonine-protein kinase 612 697 - -
Glsi08g0234 1097 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 845 1064 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0234 Glsi-ChrGlsi08 2045770 2049575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0234 33 1096 Receptor kinase-like Gene Family AT5G56040 67.910 0.0 1454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi08g0234 Pkinase 1.8e-36 CL0016