Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0221 ATGGAAATTAGGAGGGAGGATGAGACAGAGGACATGTCAATGTCACCCCCGTCGGTGGGTTCCATGCAGATAGCAGGGAGCAATGGCTTTGGTCACAGCATAGAATTCATGTCTCAGGCATACCTTCGGAATAGGTACTCAGAGATTGACATTGAACTCGAGGATTCCAGACCCAACCAAGATCGCCCCCTCCCCATTTTTCTCAAGACATTCCTAGTTAATATGCAGTTTGAAGATGTAGAATATAAGGTGAGAAATAGCCGTGCAGCCTCCAAAAACGCTGTCAATGCAGACCAAGATAGATACAAGAAAATTCTAAAGGGTATCACAGGAAGCATTGGCCCTGGTGAAATTCTTGCTCTGATGGGCCCTTCTGGAAGTGGCAAGACAACCTTGTTAAAAGTCATAGGAGGAAGATTGGTTGACAATGTCAAGGGAAAAATAACTTACAATGACGTTGGATATAATTCAGCTGTCAAGAGGAGAATTGGATTTGTGACACAAGATGATGTGCTTTTCCCACAACTAACAGTGGAAGAAACATTAGTCTTCTCTGCATACTTGAGGCTGCCAACTAACATGAGCCAACAACAAAAATATGATAGAGTGGAGGCAACTCTCAAGGATCTAGGCCTTGAAAGATGTCGCCACACGAAAATAGGTGGAGGATTTATTAAAGGCATATCAGGAGGGGAAAGGAAGAGAACAAGCATAGGATATGAAATTCTTGTGGATCCTTCACTGTTGTTACTTGATGAACCAACTTCAGGCCTTGACTCCTCCTCAGCAAACAGACTTCTTCTCACTCTGGAGGGACTAGCCAAGGCTGGAAGGACAATAATCACAACAATTCATCAACCATCCAGCAGAATCTTTCACATGTTTGACAAGCTTCTTCTGATATCAGAAGGCTACCCAGTTTACTATGGGAAGGCTAGAGAATCCATGAATTACTTTTCATCCTTGAGGTTCATCCCAGAAATACCAATGAATCCTGCAGAGTTCCTGCTTGATCTGGCCACTGGGCAAGTGAATGACATTAGTGTTCCTGAAGATATTTTGGAATATCAAGAATCTGCTGACCCTTCAAAAGCTGTTATCAGACATCTACAACTTAAGTACAAAGCTTTACTAGAGCCAAAGGAGAAAGAAGAGAATCATGGAGCAACAAAGACACCAGAAAATCTTCAAATAGCCATTCAAGCTAAGAAGGAGTGGACATTGAGTTGGTTTGACCAGTTCATGATTCTGTCTAAGAGAACATTCAGAGCAAGATGCAAAGATTATTTTGATAAGGTAAGACTAGTTCAAGCACTTGGAGTTGCAGTCTTGTTGGGGCTTCTTTGGTGGAAATCTTCAACCAATACAGAGGCTCAACTCAGAGATCAGGTTGGTTTAGTGTTCTATATCTGTATATTCTGGACATCCTCATGTATTTTTGGAGCAGTCTATGTGTTTCCATTTGAAAAGGTGTACTTGGTGAAAGAAAGGAAAGCAGACATGTACAGATTAAGCGTATACTATGCATGTAGCACCCTTTGTGACATGGTGGCACATGTTTTCTATCCTACTTTCTTCATGCTTATCTTGTATTTCATGGCTGGCTTCAAGAGGACTGTCACTTGTTTCTTCCTCACATTACTTGCTGTGCTGTTAATAGCTATTACCAGTCAAGGGGCAGGAGAACTATTTGGAGCTGCAGTTATGAGTATTCAAAGAGCAGGGATGGTTGCTTCTTTGATACTAATGCTATTCCTTCTCACAGGTGGCTACTACGTCCAGCACATACCGATATTCATGAGGTGGTTGAAGTATTTGTCATTCATGTATTATGGGTTCAGGCTGCTTCTGAAAGTGCAATATTCAGGAGACCAATTATATGAGTGTGAAAGCAAGGGAGGGTGCCGGACTCTTCAGACTTCACCTTCATTTGACACCGTCAACTTGAAAGGAGGCTTAAAAGAAGTTTGGGTTCTGCTTGCCATGGCACTTTGCTTTCGCCTCTTCGCTTACTTATGCCTCCGCAGAAGAATTAATGTCTCCAATCTTTGA 2052 0.422 MEIRREDETEDMSMSPPSVGSMQIAGSNGFGHSIEFMSQAYLRNRYSEIDIELEDSRPNQDRPLPIFLKTFLVNMQFEDVEYKVRNSRAASKNAVNADQDRYKKILKGITGSIGPGEILALMGPSGSGKTTLLKVIGGRLVDNVKGKITYNDVGYNSAVKRRIGFVTQDDVLFPQLTVEETLVFSAYLRLPTNMSQQQKYDRVEATLKDLGLERCRHTKIGGGFIKGISGGERKRTSIGYEILVDPSLLLLDEPTSGLDSSSANRLLLTLEGLAKAGRTIITTIHQPSSRIFHMFDKLLLISEGYPVYYGKARESMNYFSSLRFIPEIPMNPAEFLLDLATGQVNDISVPEDILEYQESADPSKAVIRHLQLKYKALLEPKEKEENHGATKTPENLQIAIQAKKEWTLSWFDQFMILSKRTFRARCKDYFDKVRLVQALGVAVLLGLLWWKSSTNTEAQLRDQVGLVFYICIFWTSSCIFGAVYVFPFEKVYLVKERKADMYRLSVYYACSTLCDMVAHVFYPTFFMLILYFMAGFKRTVTCFFLTLLAVLLIAITSQGAGELFGAAVMSIQRAGMVASLILMLFLLTGGYYVQHIPIFMRWLKYLSFMYYGFRLLLKVQYSGDQLYECESKGGCRTLQTSPSFDTVNLKGGLKEVWVLLAMALCFRLFAYLCLRRRINVSNL 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0221 683 Pfam ABC-2 type transporter 413 621 IPR013525 GO:0016020|GO:0140359
Glsi08g0221 683 Pfam ABC transporter 106 256 IPR003439 GO:0005524
Glsi08g0221 683 FunFam ABC transporter G family member 22 93 322 - -
Glsi08g0221 683 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 75 328 IPR003439 GO:0005524
Glsi08g0221 683 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 321 IPR027417 -
Glsi08g0221 683 CDD ABCG_EPDR 77 310 - -
Glsi08g0221 683 SMART AAA_5 115 306 IPR003593 GO:0016887
Glsi08g0221 683 Gene3D - 91 323 IPR027417 -
Glsi08g0221 683 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 59 671 - -
Glsi08g0221 683 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0221 Glsi-ChrGlsi08 1953200 1958901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0221 104 289 Calmodulin-binding Proteins AT2G36910 30.052 1.49e-11 66.2