Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0205 ATGCGTCGAGGAAGGAGATTCATTTTCTTTTTCTTAGTGGTCTTGGGCTTCTTGGATCCGCCTGTGCTCGCAGGAACTGTGACTTTCGATTTCCCATCTTTCAGCTTTCGAAACATTTCTCTTCTGGGCGATTCCTATCTCAGGAATGGCGTCATTGGCCTTACCAGAGCCATCGACGTGCCCACTTCCAGCGCAGGAGCCATAATTTACAACAACCCCATTCCTCTCTACGACCCAGAATCAAACACCACCGCTTCATTCTCCACAAGATTCGCATTCTCCATCAACAGCATGAATCCGAGCTCGTTCGGTGATGGGTTAGCGTTCTTTCTTTCTCCCAGTAACAACACTCTTGGGAGCCCGGGCGGGTATCTGGGTCTTGTTAATTCGTCCCAATTGACCAGAAACAAGTTTGTGGCGGTTGAGTTTGATACCCGGCTCGATTTGAATCTCAACGACCCGAATGAGAATCATGTGGGATTGGATATAGACAGCACGAATTCCATCAAGACTGGGGATCCGATCTTGCAGGGGATTGATCTGAAGAGTGGGAATTTGATCACGGCTTGGATTGACTACAAGACTGAGCGGAGGAAGCTCAACGTTTCCTTGAGTTATTCAAGCTTCAAGCCTGAAAGGCCGATTCTGAGTGTTGATATTGATCTTTCTGAGTATTTCAAGGGGATAATGTATGTGGGTTTTTCGGCTTCTACTGAGGGAAGCACTGACCTTCATTGGATTAAAAATTGGAGCTTTCATACTTTTGGGTTTGCTCCTGCAAGATCAAGGTCACATCCTCACAACGTTTCTGATAGCTCAGTGACTGTAACAGTGGACTTTCCCAAATCAGGTTCCAGCAAGAAGCACGACAAGAAGCTTGGACTAGGTGTCGCCATTGCAGGTCTTTCCTTTTTCTGTATAGTCCTTTCAATTTTGGGCTATATTTCTGTCCGGAAATGGAGGGGTTTAAAAAAACAGAGCTTCAAGACAGAATTTGTGGCTTGTCCAAGGGAATTCAATTACAAAGAGTTAAAATCAGCCACAAAAGGGTTTCATCCAAGTAGGATCATAGGGCATGGATCATTTGGGACAGTTTACAAAGCCTTCTTTATATCTTCAGGAACTATTGCCGCTGTGAAAAAGTCAAGACACTCCCATGAAGGTAAAACAGAATTCCTAGCTGAATTGTCCATTATAGCTGGTTTGAGGCACAAGAATTTAGTTCAGCTTCAAGGCTGGTGTGTTGAGAAGGGTGACTTGCTGCTTGTGTACGATTTCATGCCCAATGGGAGCTTAGATAAGATGCTTTACCAAGAATCTGAACGAGGTAACTTATTAAACTGGTCCCATAGACTCAATATTGCTATTGGGGTGGCTTCTGTTCTTACTTATCTCCATCAAGAATGTGAGCAGAGAGTCATTCATAGAGACATTAAGACTGGAAATATATTGCTAGATGGAAACTTCAGCCCGAGGCTGGGTGATTTTGGATTGGCAAAGCTCATGGATCATGATAAAAGCCCGGTTTCAACATTAACATCTGGAACAATGGGATACCTTGCACCTGAATATCTTCAGTGTGGAAAGGCAACTGAGAAAACCGACGTTTTCAGCTATGGAGTTGTTTTACTTGAAGTGGCTTGTGGGAGGAGGCCAATTGAAAGAGAGGGCCAAAAAATGGTCAATTTGATTGATTGGGTTTGGGGGTTGCATTCTGAAGGTAAGATAATTGAAGCAGCTGACAAGAGGTTGAGTGGAGAATTTGCGGAGGAAGAAATGAGGAAGCTACTACTCCTGGGCTTGAGCTGTGCGAACCCAGATAGTGCAGAGAGGCCTTCCATGAGTAGAGTCCTACAGATTCTCAACAATGAAGCAGCACCTCTTGTTGTGCCAAAGGTGAAACCAAGCCTTACATTCTCTTGTGGACTGCCTTTGACTATTGACGAGATTGTTTCAGATGCTGAAGACTTCAATACCAGCCAGTCTATGTGTGAGATAAAAATTAACTGA 2010 0.4428 MRRGRRFIFFFLVVLGFLDPPVLAGTVTFDFPSFSFRNISLLGDSYLRNGVIGLTRAIDVPTSSAGAIIYNNPIPLYDPESNTTASFSTRFAFSINSMNPSSFGDGLAFFLSPSNNTLGSPGGYLGLVNSSQLTRNKFVAVEFDTRLDLNLNDPNENHVGLDIDSTNSIKTGDPILQGIDLKSGNLITAWIDYKTERRKLNVSLSYSSFKPERPILSVDIDLSEYFKGIMYVGFSASTEGSTDLHWIKNWSFHTFGFAPARSRSHPHNVSDSSVTVTVDFPKSGSSKKHDKKLGLGVAIAGLSFFCIVLSILGYISVRKWRGLKKQSFKTEFVACPREFNYKELKSATKGFHPSRIIGHGSFGTVYKAFFISSGTIAAVKKSRHSHEGKTEFLAELSIIAGLRHKNLVQLQGWCVEKGDLLLVYDFMPNGSLDKMLYQESERGNLLNWSHRLNIAIGVASVLTYLHQECEQRVIHRDIKTGNILLDGNFSPRLGDFGLAKLMDHDKSPVSTLTSGTMGYLAPEYLQCGKATEKTDVFSYGVVLLEVACGRRPIEREGQKMVNLIDWVWGLHSEGKIIEAADKRLSGEFAEEEMRKLLLLGLSCANPDSAERPSMSRVLQILNNEAAPLVVPKVKPSLTFSCGLPLTIDEIVSDAEDFNTSQSMCEIKIN 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0205 669 CDD STKc_IRAK 357 623 - -
Glsi08g0205 669 Gene3D Phosphorylase Kinase; domain 1 315 426 - -
Glsi08g0205 669 PANTHER - 54 631 - -
Glsi08g0205 669 FunFam L-type lectin-domain containing receptor kinase VIII.1 427 639 - -
Glsi08g0205 669 CDD lectin_legume_LecRK_Arcelin_ConA 29 256 IPR001220 GO:0030246
Glsi08g0205 669 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 263 IPR013320 -
Glsi08g0205 669 Gene3D - 25 273 - -
Glsi08g0205 669 Pfam Protein kinase domain 352 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0205 669 ProSitePatterns Legume lectins beta-chain signature. 139 145 IPR019825 -
Glsi08g0205 669 FunFam L-type lectin-domain containing receptor kinase VIII.1 25 265 - -
Glsi08g0205 669 ProSiteProfiles Protein kinase domain profile. 351 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0205 669 SMART serkin_6 351 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0205 669 FunFam L-type lectin-domain containing receptor kinase VIII.1 316 426 - -
Glsi08g0205 669 Pfam Legume lectin domain 27 263 IPR001220 GO:0030246
Glsi08g0205 669 SUPERFAMILY Protein kinase-like (PK-like) 335 643 IPR011009 -
Glsi08g0205 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Glsi08g0205 669 Gene3D Transferase(Phosphotransferase) domain 1 427 629 - -
Glsi08g0205 669 ProSitePatterns Protein kinases ATP-binding region signature. 357 381 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0205 Glsi-ChrGlsi08 1783625 1785634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0205 1 656 Receptor kinase-like Gene Family AT5G55830 63.690 0.0 862
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Glsi08g0205 Pkinase 3.1e-49 CL0016