Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0203 ATGCCCCTGTGCCATTGGAGCAAAGAAGGACGAAGATGCTGGTTTTCCATGGCAATTTCAGAAAACGAGTTAGCGGGGATCTTGCCGGCGGGGAACCCCGCCGACGACAGGGAAGTTTCGATCACCAATGAGGAGCAACCTGCTCACCATGTGGGGATGAGAGAGCAGGATCAATACATGCCGATCGCCAACGTCATCAGAATCATGCGGCGGATTCTTCCGGCACATGCTAAAATCTCCGACGACGCCAAAGAGACGGTTCAAGAGTGCGTGTCGGAGTACATTAGCTTCATAACCAGTGAGGCTAACGAGCGGTGCCGGAGGGAGCAGCGCAAAACTGTGACAGCGGAAGATGTGCTGTGGGCTTTAGGGAAGTTGGGCTTTGACGATTACGTGGAGCCTCTCACCGTGTTCCTCAATCGCTACCGCGACGGCGACAGTGTCCGCTCCGCTCCAAGGCGGAGCAATCCAGAATATCCACCGGCGGTTGGCGTTGGGATGCCGCCACCACAATTGTCACCTTACGGCTCCGGTTTTCCTATGGGACCAAACCCGATGGGGATGAGCGGGTACTACATGAGTAGTGGGTCGGGTGCGAGTACCTCAAGTAATGCTCCCGCTTACTATGATCCATTTCCTCACCTGAAAGGAGATAATTTCTGA 663 0.5475 MPLCHWSKEGRRCWFSMAISENELAGILPAGNPADDREVSITNEEQPAHHVGMREQDQYMPIANVIRIMRRILPAHAKISDDAKETVQECVSEYISFITSEANERCRREQRKTVTAEDVLWALGKLGFDDYVEPLTVFLNRYRDGDSVRSAPRRSNPEYPPAVGVGMPPPQLSPYGSGFPMGPNPMGMSGYYMSSGSGASTSSNAPAYYDPFPHLKGDNF 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0203 220 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 43 146 IPR027113 GO:0001228|GO:0006355|GO:0016602
Glsi08g0203 220 Gene3D Histone, subunit A 49 158 IPR009072 GO:0046982
Glsi08g0203 220 ProSitePatterns NF-YB/HAP3 subunit signature. 90 106 IPR003956 GO:0005634|GO:0006355|GO:0043565
Glsi08g0203 220 PRINTS CCAAT-binding transcription factor subunit A signature 106 124 - -
Glsi08g0203 220 PRINTS CCAAT-binding transcription factor subunit A signature 125 143 - -
Glsi08g0203 220 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Glsi08g0203 220 SUPERFAMILY Histone-fold 56 146 IPR009072 GO:0046982
Glsi08g0203 220 FunFam Nuclear transcription factor Y subunit B-6 48 159 - -
Glsi08g0203 220 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 60 123 IPR003958 -
Glsi08g0203 220 MobiDBLite consensus disorder prediction 147 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0203 Glsi-ChrGlsi08 1762636 1763900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0203 34 198 CCAAT-HAP3 Transcription Factor Family AT1G21970 56.250 6.80e-60 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Glsi08g0203 CBFD_NFYB_HMF 1.1e-24 CL0012