Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0195 ATGGCGGACTCGGACAATGATTCCGGAGGGGCACTAAACATGGGAGCCAATGCGAATTGCAGCGAATTGTCGCCGCGAGAGCAAGACCGGTTTTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCACTGCCGGCGAATGCGAAGATCTCGAAGGACGCAAAGGAGACGGTGCAAGAGTGCGTTTCGGAGTTCATCAGCTTCATTACCGGGGAGGCCTCCGACAAGTGCCAGAGGGAGAAGCGCAAGACCATCAATGGGGACGACTTGCTCTGGGCCATGACCACCTTGGGGTTCGAGGACTACGTGGAGCCCCTCAAGATTTACTTGCAGAGGTTTAGGGAAATGGAGGGAGAAAAGACCGGGGCGGCGCGTGACAAGGACGGTGGAGGTGCTGCTGCAAATAGTGGGTTCGAGGGTGGGGGTGGTGGAATGGGGATGATGATGCATCAAGGACACGTGTACGGTTCTCCAATCGGTCTGAGTGGAGGTAGTGGTGGTCCTGTTATGGGTAAGAGTGAGCCAAGTTATCCTGGGATTGGATCTAATGCAGGGAGACCCAGATAG 570 0.5561 MADSDNDSGGALNMGANANCSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQRFREMEGEKTGAARDKDGGGAAANSGFEGGGGGMGMMMHQGHVYGSPIGLSGGSGGPVMGKSEPSYPGIGSNAGRPR 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0195 189 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 126 IPR027113 GO:0001228|GO:0006355|GO:0016602
Glsi08g0195 189 FunFam Nuclear transcription factor Y subunit B-3 20 140 - -
Glsi08g0195 189 Gene3D Histone, subunit A 19 140 IPR009072 GO:0046982
Glsi08g0195 189 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Glsi08g0195 189 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Glsi08g0195 189 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Glsi08g0195 189 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Glsi08g0195 189 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Glsi08g0195 189 SUPERFAMILY Histone-fold 28 138 IPR009072 GO:0046982
Glsi08g0195 189 MobiDBLite consensus disorder prediction 10 24 - -
Glsi08g0195 189 MobiDBLite consensus disorder prediction 160 189 - -
Glsi08g0195 189 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0195 Glsi-ChrGlsi08 1700365 1700934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0195 1 125 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.400 1.01e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Glsi08g0195 CBFD_NFYB_HMF 1.7e-27 CL0012