Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0188 ATGGGGTTTTCTAGAGTACTTTCAGTCTTGTTTGTTCTGGTTTTCCGGGTTTATTTGGTAGATTTAGCAGAAGGTGCAGGCAGTGGCTATGGCCATGATCGTGTCAGGAACTACATTAGTTGGAAGGATTTGCTGGTGGATGAGCAGACCTTGAAAAACTCCATTAACGAGGGTGGAGTTATTGTGGTTGATCAGCTTGGTAGGGGACATTCCAGAACTGTGCAGGGAGCTGTTGATATGGTTCCAGATCACAACACAGAGAGGGTCAAAATCTACATTTATCCAGGAATTTACAGAGAGAAAGTGTATGTGCCAAAGACGAAGCCATATGTAACACTGATAGGTGGAAGAAATGGAACAGAAAGTGCAGTGATTACTTGGAACAGTAAGTCATCGGACAGAGGATTTGATGGCCAAGCATTGGGCACATATGCTTCAGCAACCGTGGTGGTAGAATCTGATTATTTCTGTGCAACGAAGGTCACTTTTGAGAACTCTGTAGTAGCAGTGCCTGGTGGAAATGGAATGCAAGCGGTAGCATTGAGGGTAGACAGTGACAGAGCCATGTTCTATAGAGTTAGGATCAAAGGGGGGCAGGACACTCTCTTGGACAACACTGGAACCCATTACTTCTACAAGTGTTACATCCAAGGAAAGGTTGATTTCATATTTGGCAGTGCAAAATCACTTTATCAGGAGTGTCGTCTCCAATCAATAGCAGAGAACTATGGAGCAATTGCAGCTCATCACAGGGATTCATCACATGAAGATACAGGGTTTTCTTTTGTAGGATGCACAATCCGAGGCACTGGTAGTGTCTACCTTGGGAGAGCTTGGGGAGATTATTCAAGAGTAATATATTCCCAGTGTTACATGGATAATATTATTACTCCAGAAGGATGGACGGAATGGAATCATCCATCTAGAACGAAGACTGCAGTGTTTGGGGAGTACCAGTGCCAGGGAAGAGGAGCAGATAGAAGAGGGAGGGTGCAATGGTCAAAATCTTTGAGCTATGAAGAAGCAAGGCTTTACCTGGACAAGAGCTTCATAAATGGGGACCAGTGGCTTAATCTATAG 1080 0.4426 MGFSRVLSVLFVLVFRVYLVDLAEGAGSGYGHDRVRNYISWKDLLVDEQTLKNSINEGGVIVVDQLGRGHSRTVQGAVDMVPDHNTERVKIYIYPGIYREKVYVPKTKPYVTLIGGRNGTESAVITWNSKSSDRGFDGQALGTYASATVVVESDYFCATKVTFENSVVAVPGGNGMQAVALRVDSDRAMFYRVRIKGGQDTLLDNTGTHYFYKCYIQGKVDFIFGSAKSLYQECRLQSIAENYGAIAAHHRDSSHEDTGFSFVGCTIRGTGSVYLGRAWGDYSRVIYSQCYMDNIITPEGWTEWNHPSRTKTAVFGEYQCQGRGADRRGRVQWSKSLSYEEARLYLDKSFINGDQWLNL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0188 359 FunFam Pectinesterase 56 359 - -
Glsi08g0188 359 Pfam Pectinesterase 61 354 IPR000070 GO:0030599|GO:0042545
Glsi08g0188 359 SUPERFAMILY Pectin lyase-like 58 358 IPR011050 -
Glsi08g0188 359 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 52 358 - -
Glsi08g0188 359 Gene3D - 58 359 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0188 Glsi-ChrGlsi08 1654096 1657550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0188 1 311 Carbohydrate Esterase AT5G55590 54.518 6.72e-127 365