Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0187 ATGTCCATGGCAATTTCAGGATTTCGGGTAGAGGTTGCTGTGGTCCTGGTCAATTTTGTCAACCAGCCAGCTCTGGATACTTGGGAGTTTCTTAAAATTTGGGCAGAGGATCGTGGTTCTTCTAGGGACTGTGAGATTGAGGAAGACATTACTTACTACTTGGATGTTACTAGCTATCAGTTGGGCGAGCATGTCTCTTTTTTAATTAGGGTTTCTGACTTTGCTGAGATATTCGTGTGCTGCGTTTCTGGGATTCTGTGCATTTCTGGTGCTCTGTTGACTTCCTTTGGTATTTTCTTCAAGATGACTGCAACTGATCGCCATTTCATAGAATGGAAAGAGCAGTTTATTTCGCAGGAGCGTGGCAATCGTGTTGTCCACTATTACCTAAAGGATTCTGCTGGGGAATCCATCCTTGCAGTTGTGGGCACTGAGAGGAGCGTTAGACACATGTTCTATGTTGTTGCTGAGAAGTTCCTAGAAATTTGTGGGAAGGAGGATGCCATCCATGCTGGTTTCAAATGGAGGTCCAGAAGAGAGGTGGTGGATTGGTTGACATCAATGCTATCAAAGCAGCATCTGCTAGGGGATAGAAATGTGTTGCCAATTCGTAATTTGTCACAAGCTCATGAGACCACTGATAGCAGCATCAATGAATTTATTGATCTGCATAAACAGATATCAAATGACAAGGGCCTTCTAATGAGTAACTTCAAAGGACAAAATTCTGACATTGTTTGGTCAGGAGTTGCATGGACATGTGGCAAACAACTTAAGCATTATCCTGCTTTTTGTAGGAATGGGATTAAAATAGTGATTCAATCTTTTGTATTTGTCATGGCAACTGGAGAGAATCATTATGTTGCTTATTTGGAAGATATGTACGAAGACAAGAGGGGTCAAAAAAAGGTTAAAGTGAGGTGGTTTCACCATAATCAGGAAGTCAAGGGTGTAATTCCTGTGAGAAATCCTCACCCTCAAGAAGTTTTTATCACATCTTATTCGCAAGTGATTAGTGCAGAGTGTGTTGATGGTCCTACTACAGTCTTAACTCGGGAACATTATGAAAAATGCTTGCCTGCTTTTCCCCCTTCTTCATCAGACAGAATACATTTATGCTTTAGGCAATTCAGAAACAATAAAGTGAAGCCCTTTGACTTGAGTAAATTACGTGGCTACTATGACCAACCAATTCTCTCTTGCTTGCACCTTGATTCCTTCCCAAACCCTAAGTGCAATAGCCTTGCAGAAGAAGATGAGGAGTTGAGTGCAGGTGATGATGTAAAGCTGGAAGCTAAGAGGACCAGAAGTGGTAGGGGGTCTCCTCAGAACTTGATAGATCGCCAGGGAGTTAGGAAATTAATTAGAAGAAGTCAGCAAATAACAGTGTATAAAACCTTCCAGAATGTAAATTATGCTAGGCCAGATAGGAGATTGCTTTCCCTGAAACAGGTCAAGTGTCAGCCTTGGTATAACTCCATATACAAGGTTGATGACAAGATAGAGTTACTCTGTCAAGACAGTGGCATCAGAGGCTGCTGGTTCAGGTGTACAGTAATGCAGGTATCTCGGAAACAGGTGAAAGTTCAATATAGTGATGTGCAGGATGAAGATGGAAATGGCCATCTTGAGGAATGGATCCCCGCTTTCAAACTAGCCATGCCTGATAAACTTGGGATGAGACATTCTGGCCGGCCCACCATTAGGCCAGCCCCGACTTATGAGCAGCAAGGAGAACTGGCTGTTGAGATTGGAACTGCGGTAGATGCATGGTGGAGTGATGGATGGTGGGAGGGGGTTGTAAGTGAAATTGACAACTGCGGTGATGATGCTGTGCAAGTTTACTTTCCTGGTGAAGGCTTGCTGATGAATGTATGCAAGAAGGATCTAAGAATATCTAGAGATTGGTTGGGGGACCAGTGGGTTGACATTAAGCCAAAGCCTAATGTAGCCTCTACCATATTTGCAGTTAATAGCTCTAACTCAAAGCTTTCAGTGTCCCCATCTATCACCAAAGAGGTTGACTCTATCAGGTTTGCTATTTCAAGTCATGATGTTCCTGTTACTAAGAAGTCTAATGAAGTCAATATTGCTGAAGACTGGAGTTGTGTTAATGATAATAAGCCCCCTTCACAAGAAGAAAAAAGTACTCAAGTTGATGATACTAAGACAGATGGCGGTTGTGATAATGAAAATAATGACAACGATGATGATAAGGACAGCACCGATGGTGATGATAACAAAGACAGTGATAATGATAATAGGGATATGGAGGTATGTGGGATTTCTGGAGAGGACAGCAAAGCTGTAGAACTCATGGAAGTGGCTGTATAA 2334 0.4237 MSMAISGFRVEVAVVLVNFVNQPALDTWEFLKIWAEDRGSSRDCEIEEDITYYLDVTSYQLGEHVSFLIRVSDFAEIFVCCVSGILCISGALLTSFGIFFKMTATDRHFIEWKEQFISQERGNRVVHYYLKDSAGESILAVVGTERSVRHMFYVVAEKFLEICGKEDAIHAGFKWRSRREVVDWLTSMLSKQHLLGDRNVLPIRNLSQAHETTDSSINEFIDLHKQISNDKGLLMSNFKGQNSDIVWSGVAWTCGKQLKHYPAFCRNGIKIVIQSFVFVMATGENHYVAYLEDMYEDKRGQKKVKVRWFHHNQEVKGVIPVRNPHPQEVFITSYSQVISAECVDGPTTVLTREHYEKCLPAFPPSSSDRIHLCFRQFRNNKVKPFDLSKLRGYYDQPILSCLHLDSFPNPKCNSLAEEDEELSAGDDVKLEAKRTRSGRGSPQNLIDRQGVRKLIRRSQQITVYKTFQNVNYARPDRRLLSLKQVKCQPWYNSIYKVDDKIELLCQDSGIRGCWFRCTVMQVSRKQVKVQYSDVQDEDGNGHLEEWIPAFKLAMPDKLGMRHSGRPTIRPAPTYEQQGELAVEIGTAVDAWWSDGWWEGVVSEIDNCGDDAVQVYFPGEGLLMNVCKKDLRISRDWLGDQWVDIKPKPNVASTIFAVNSSNSKLSVSPSITKEVDSIRFAISSHDVPVTKKSNEVNIAEDWSCVNDNKPPSQEEKSTQVDDTKTDGGCDNENNDNDDDKDSTDGDDNKDSDNDNRDMEVCGISGEDSKAVELMEVAV 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0187 777 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 495 733 - -
Glsi08g0187 777 Pfam BAH domain 276 379 IPR001025 GO:0003682
Glsi08g0187 777 SMART agenet_At_2 580 638 IPR014002 -
Glsi08g0187 777 SMART agenet_At_2 493 559 IPR014002 -
Glsi08g0187 777 SMART BAH_4 269 388 IPR001025 GO:0003682
Glsi08g0187 777 CDD BAH_plant_1 264 393 - -
Glsi08g0187 777 Gene3D - 237 396 IPR043151 -
Glsi08g0187 777 MobiDBLite consensus disorder prediction 713 730 - -
Glsi08g0187 777 MobiDBLite consensus disorder prediction 745 762 - -
Glsi08g0187 777 MobiDBLite consensus disorder prediction 701 777 - -
Glsi08g0187 777 CDD Tudor_Agenet_AtDUF_rpt1_3 495 572 - -
Glsi08g0187 777 ProSiteProfiles BAH domain profile. 269 388 IPR001025 GO:0003682
Glsi08g0187 777 Pfam Agenet domain 498 572 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0187 Glsi-ChrGlsi08 1647331 1653288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0187 507 636 PHD Transcription Factor Family AT5G58610 28.571 4.49e-12 67.8