Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0172 ATGCAAACACCTGAGAAACATAAAGTTTCCTATGGTTCTAGCAGTTTCTACAATGAGCCTGTGCAAAATCTAGAGTCATATTGCCCGCCTACAAGTGAGAACCAAGACAATCACTCATTTTCTGACAACAGCAGCCAAGAAGCAACCTACTCTTCAGTTCAGACTTTAGAACAATATTGCACCCTTGAATCTTCCTCAAGAACCAATAGTTTCCCTCACCATAATTGTTCTCCATCTAATGACAGTCCGGTGTCATGGCTAGAGTCAAAATCTCATGTCTTAAAGCCACAACATTCTCTTGACATTATCAATCGCTCGCCAGAGAACGAGTCTTGTTTGACGCATGATCTTGATGACTTGAGGCACAAGATGAGGGAGCTTGAAACTGCTATGCTGGGACCTGATACAGAATTTCTAGACATATATGATGCTGTAATTCCGGAAGAATCTAATCTGGTTTTGTCGGAGGAGGAGAAGTGGAAGCAAATGATGGAAATAGTATCTAGAGGGGATTTGAAAGAGATGCTTTGTGCTTGTGCAAAAGCAATGGCAGGGAATGACATGGAGACAACTGAATGGTTGATGTCTGAGTTGCGCAAAATGGTGTCCATTTCGGGCAACCCGGTGCAACGATTGGGAGCATACATGTTGGAGGCTCTTGTTGCAAGGTTGGCGTCTTCAGGAAGTGCAATCTACAAAGCCTTGAAATGTAAAGAGCCAACCGGTAATGAACTTCTCTCTTACATGCACTTACTATATGAAATTTGCCCATACTTCAAGTTTGGGTATCTGTCAGCAAATGGGGCAATTGCTGAGGCCGTGAAAGAGGAAAATAGAGTCCATATAATTGATTTTCAGATTAACCAAGGCAGCCAGTGGGTTAGCCTAATCCAGGCTCTTGCTGCTCGACCCGGAGGGCCCCCCAAGATCAGAATAACTGGTGTTGATGACTCCACTTCAGTTTATGCCCGAGGAGGGGGGCTTGACGTTGTGGGGAAAAGGTTATCAAGACTTGCACAATCATGTCAGGTTCCGTTTGAGTTCCATGCTGTTGGAGTTTCTGCTTCTGAGGTACAACTCGAACATCTTGAACTTCAATCTGGTGAAGCTGTTGTAGTAAATTTTGCCTTGATGTTGCACCATCTGCCGGATGAAAGCGTGGACAGCCAGAATCCTCGTGACCGGTTGTTGAGATTGGTAAAGCACTTGTCCCCTAAAGTTGTCACTCTTGTGGAGCAAGAGTGTAACACCAACATTGTCCCCTTCTTCCCACGTTTCATCGAGACATTGAACTATTACTTGGCTGTTTTTGAATCAATCGACGTTGTTCTTCCGAGGGAGCACAGAGAGAGGATCAACGTGGAACAGCATTGCCTGGCTCGAGAAGTTGTCAACTTGGTAGCGTGTGAAGGGTTAGAAAGAGTGGAACGCCCTGAGCTGCTGGAGAAGTGGAGATCACGATTCACAATGGCCGGATTTACACCATATCCATTGAGTTCCTTTGTCAATTCTACCATCAAGAATTTGCTGGAGAACTACTGTGGAAATTACACTCTAGAAGAGAGAGATGGTGCATTATACCTTGGTTGGATGAATCAAGCTCTTGTTGCCTCTTGTGCTTGGAGGTGA 1629 0.4481 MQTPEKHKVSYGSSSFYNEPVQNLESYCPPTSENQDNHSFSDNSSQEATYSSVQTLEQYCTLESSSRTNSFPHHNCSPSNDSPVSWLESKSHVLKPQHSLDIINRSPENESCLTHDLDDLRHKMRELETAMLGPDTEFLDIYDAVIPEESNLVLSEEEKWKQMMEIVSRGDLKEMLCACAKAMAGNDMETTEWLMSELRKMVSISGNPVQRLGAYMLEALVARLASSGSAIYKALKCKEPTGNELLSYMHLLYEICPYFKFGYLSANGAIAEAVKEENRVHIIDFQINQGSQWVSLIQALAARPGGPPKIRITGVDDSTSVYARGGGLDVVGKRLSRLAQSCQVPFEFHAVGVSASEVQLEHLELQSGEAVVVNFALMLHHLPDESVDSQNPRDRLLRLVKHLSPKVVTLVEQECNTNIVPFFPRFIETLNYYLAVFESIDVVLPREHRERINVEQHCLAREVVNLVACEGLERVERPELLEKWRSRFTMAGFTPYPLSSFVNSTIKNLLENYCGNYTLEERDGALYLGWMNQALVASCAWR 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0172 542 Pfam GRAS domain family 173 542 IPR005202 -
Glsi08g0172 542 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 111 536 IPR005202 -
Glsi08g0172 542 ProSiteProfiles GRAS family profile. 163 542 IPR005202 -
Glsi08g0172 542 MobiDBLite consensus disorder prediction 1 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0172 Glsi-ChrGlsi08 1508537 1510165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0172 1 542 GRAS Transcription Factor Family AT1G50600 58.514 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Glsi08g0172 GRAS 1.4e-134 CL0063