LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi08g0171	ATGGACGCAGCAGCTATCAACTCCTCCGAAAGCATCCCGGGTTCGGAGCTTCGGCTCCGCGAAGGGCCATCCGGTGATCCGAATCAATTCGGGTCGTGGCTGAACTCCGACGTCGTTTCCCGCGGTGCAAGGTCAGCTCTGGAATTTTCTCTTTGGGTTTATGGTTTTCCCCTTTTGCTCGAAATGGGAGTGTGTGTGATATACAGAAGTTTTACGTTCTGTTTGGTTACTGAGAAAAGTAAAGGATTTTATATATGGGTGCTTGTGTTGGGACCTTTAGATTCTGATGCCTGCTCTTATAGATTTCTGTATTGGCTGCTTTATGCCTATTGCCCAATACAATCACTGTACTGGGCTATCTTGTCCAATGGACACAAAAACTTGTTTGGAGAAGAAAATAATTTCTCTTCTACTCGATCATTGTGGTCCTTTTTGCATAGCTGGCCGATAAATCTGGTTACTAGTTTGCTTATCTCTGATAGTCAGATTTTCACTGTGGTGGAGGCTTCGCCAACTACAGGATCCCTTACTAAACCTCAAACTATACATGGTTCTGTTGCTTCTGCTGCATTTCCTGTAACCACTGTATGCTTCAATACCAATACTGTTGATGACAGAAAATCAAGCTTCTTTGAGTTTAATCCAAACAGTATATCAAATATGGTTTCCTCAGATTTCAACAACCATGTAAATGAACAATCTGTGCAAATAGAAGGCTCAGGCCAAGCTCAATCAGTTGTCTCGTCACCTTTAGTGAAAAGTGAGATAGCAGTGCCCTCTAATGAATTAAGTCTATCATCACCTGTTCAAATGGTTTGTTCAGGGACTAGTGCTTCTGTTGAAGCTGATTTGGATGAATCTAACCACAGAGGCGACATGTCCACTGTGGTTCAAGCATCACAAGGTGAGGTTAGAGGCAGTGGTATTTCAGTTGCAGCTGAGAGAACATCTGATGATGGATATAATTGGCGGAAATATGGACAGAAACATGTTAAAGGGAGTGAATTTCCACGGAGCTATTACAAATGTACACATCCTAACTGTGAAGTGAAAAAACTATTTGAACGCTCCCATGATGGGCAAATCACTGAGATAATTTACAAGGGATCACATGATCATCCTAAACCTCAACCAAGTCGCCGATATTCTAATGGTACTATTATGTCTATGCACGAAGAGAGATCTGATAAGGCTTCACCTTTGTCCGGTCAAGATGCAAATGATGATAATCTAGAGGGTGCAGGATTAGTGTCAAATAGGGTCAATGATGAGGTTGATGAAGATGACCCCTTCTCAAAACGAAGGAAGATGGAAATTGGAAATGCTGATATCATTCCTATAGTTAAGCCTATTCGGGAACCACGGGTTGTTGTACAAACTCTGAGTGAGGTTGATATATTGGATGATGGGTATCGCTGGCGTAAGTATGGGCAGAAGGTTGTGAGAGGCAATCCTAACCCTAGGAGTTACTACAAATGCACAAATGCTGGTTGCCCAGTTAGAAAACATGTGGAGAGGGCATCTCATGATCCGAAAGCTGTGATAACCACATATGAGGGTAAGCACAACCATGATGTACCTACTGCAAAGAATAGTAGCCATGATACAGCGGGACCAGCAGCTGCAGGTGGACAGACAAGAATAAGATCAGAAGAAAGTGATACTATTAGCCTTGACCTGGGGATGGGAATTAGCTCAGCTGCTGAAAATAAATTGAATGGGCAAGGGCAAATGCTGCTCTCTGAATTTGGGGGTAGTCGAACTCACGCTGGCAATTCCAATTCAAATTTCAAGTTTGTTCATACTCCCCCAGCACCAGCATACTTTCGTGTTCTAAATAATGGGTCGAATCCGTATGGTTCTAGAGAACATCTGAGTGATACTCCATCTTTGAACCATTCCACTTATCGGTGCCCCCAGAACATGGGAAGAATGCTAGCAGGTCCATAA	1950	0.4303	MDAAAINSSESIPGSELRLREGPSGDPNQFGSWLNSDVVSRGARSALEFSLWVYGFPLLLEMGVCVIYRSFTFCLVTEKSKGFYIWVLVLGPLDSDACSYRFLYWLLYAYCPIQSLYWAILSNGHKNLFGEENNFSSTRSLWSFLHSWPINLVTSLLISDSQIFTVVEASPTTGSLTKPQTIHGSVASAAFPVTTVCFNTNTVDDRKSSFFEFNPNSISNMVSSDFNNHVNEQSVQIEGSGQAQSVVSSPLVKSEIAVPSNELSLSSPVQMVCSGTSASVEADLDESNHRGDMSTVVQASQGEVRGSGISVAAERTSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGSHDHPKPQPSRRYSNGTIMSMHEERSDKASPLSGQDANDDNLEGAGLVSNRVNDEVDEDDPFSKRRKMEIGNADIIPIVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKNSSHDTAGPAAAGGQTRIRSEESDTISLDLGMGISSAAENKLNGQGQMLLSEFGGSRTHAGNSNSNFKFVHTPPAPAYFRVLNNGSNPYGSREHLSDTPSLNHSTYRCPQNMGRMLAGP	649

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi08g0171	649	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	233	551	IPR044810	GO:0003700
	Glsi08g0171	649	FunFam	WRKY transcription factor	307	377	-	-
	Glsi08g0171	649	SUPERFAMILY	WRKY DNA-binding domain	314	376	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi08g0171	649	Gene3D	WRKY domain	309	377	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi08g0171	649	Gene3D	WRKY domain	452	528	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi08g0171	649	MobiDBLite	consensus disorder prediction	391	414	-	-
	Glsi08g0171	649	SUPERFAMILY	WRKY DNA-binding domain	459	527	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi08g0171	649	ProSiteProfiles	WRKY domain profile.	462	527	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi08g0171	649	ProSiteProfiles	WRKY domain profile.	312	376	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi08g0171	649	SMART	WRKY_cls	317	375	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi08g0171	649	SMART	WRKY_cls	467	526	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi08g0171	649	FunFam	WRKY transcription factor 33	454	520	-	-
	Glsi08g0171	649	MobiDBLite	consensus disorder prediction	1	25	-	-
	Glsi08g0171	649	Pfam	WRKY DNA -binding domain	468	524	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi08g0171	649	Pfam	WRKY DNA -binding domain	318	374	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi08g0171	649	MobiDBLite	consensus disorder prediction	522	551	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi08g0171	Glsi-ChrGlsi08	1501155	1507300	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi08g0171	154	649	WRKY Transcription Factor Family	AT4G26640	53.571	2.20e-162	474

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Glsi08g0171		WRKY	1.7e-25	CL0274