Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0167 ATGCACCAAAGATCTGATGCTCTTAGATCGACTTTGACAAAACCCACTTCGTATCTGATCGAAGCATCGACTGGGTTCTGTCTGAAATTTAAGATAAGGTGTGCCTTCTTCACAGGAGAACAGATGGAATCAGATCTTGGCAAACTCTTCATTGGAGGAATTTCTTGGGATACTGATGAAGAACGTCTTAAAGAATATTTTGGGAAATATGGAGAGGTGATAGAGGCCGTGATCATGAGAGATCGTACAACAGGTCGAGCTCGTGGCTTTGGTTTTGTTGTGTTCGCTGATCCTGCTGTTGCAGAAAGAGTCATTATGGATAAACACATAATTGATGGGCGCACAGTTGAAGCAAAGAAGGCTGTTCCCAGGGATGATCAGCACACTATGATTAGAAATTCTGGAAGTGTCCATGGCTCTCCTGGTCCTGGGCGAACAAAAAAGATTTTTGTTGGAGGTTTACCATCAAGTATTACTGAAAGTGATTTTAAGAAGTATTTTGATCAGTTCGGTACAATTACTGATGTAGTAGTCATGTATGATCACAATACCCAGAGGCCAAGAGGCTTTGGCTTCATCACTTATGATTCAGAAGAAGCTGTGGACAGAGTTCTTTATAAAACATTTCATGAACTCAATGGAAAGATGGTTGAGGTTAAGAGGGCAGTTCCAAAAGAACTTTCCCCTGGACCCAGCAGGAGTTCGTTGATAGGGAATAACTATGGTTTGACTAGGACCAGTAACTTCCTAAACAGTTATGCTCAGAGTTTTAATATGAGCCCAATTGGAGGCTATGGAGTGAGGATGGATGGTAGGTTTAGTCCTCTTACGAGTGGTAGAAGTGGATTTTCCCCATTTGGCACCAGTGGCTATGGAATGGGAGTGAATTTAGATGCAGGATTGAACCCAAGCTATGGTGGGACTTCCAATTACGGGAGCAATCTAGGATACGGTCGGATATTTAGTCCTTTCTACAGTGGCAACTCTAGCAGATACACTACTCCTATAGGCTACAGTGGGGGTAATGGAAGAAGTGATTCTCTTATGAACTCAACTTCTCGAAATGTCTGGGGAAATGGGGGCCTGAATAATGCCAATAACCCAGCCAACTCCGGTGCTTACTTGGGATCTGGAAATGGGAGTTTCGGTGTTTCATTTAAAAATAGCGGCACAAATTGGGGTCAATCCATTCCAGCTCAGGGTGGAATGGCTGCTTCTGGCTACAACACTGGGGGTAATGTTTATGAAGGTGGAGATAGCAGCTTTGGGTTAGGAGGGGGAGGTTATGGAAGAAATAGCAATACAGGTGTAACTCCACCCCCTACATTTACTCCATCAACTGGTGGTTACGAAGGATCCTATGGGGACTTGTACCATAGTGGTTCAGTTTACAGTGAATCAACTTGGCGGTCTGCTGCTTCCGACCTAGATGGTTCCAGCTCATTTGGTTATGGACTTGGAGGTATAGCCTCAGATGACCCAGTAAAGAGTTCAGAGGGTTATATTGGAAACTACAATGTTACGAGCAGACAACCTAATAGAGGTGAGACCTTTCATTACATCAAGAGATATGTTAATTGGGTTTGTCATGGTAACAGAAGATCAAGGGAAACTGGTCAGAAAAAAAGAGGTTTTGTGAATTCATACATCTTCATCAATTTAGAGACTTCAGCTCATGAGGAAATTTATTATATATAG 1698 0.4282 MHQRSDALRSTLTKPTSYLIEASTGFCLKFKIRCAFFTGEQMESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPAVAERVIMDKHIIDGRTVEAKKAVPRDDQHTMIRNSGSVHGSPGPGRTKKIFVGGLPSSITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPSRSSLIGNNYGLTRTSNFLNSYAQSFNMSPIGGYGVRMDGRFSPLTSGRSGFSPFGTSGYGMGVNLDAGLNPSYGGTSNYGSNLGYGRIFSPFYSGNSSRYTTPIGYSGGNGRSDSLMNSTSRNVWGNGGLNNANNPANSGAYLGSGNGSFGVSFKNSGTNWGQSIPAQGGMAASGYNTGGNVYEGGDSSFGLGGGGYGRNSNTGVTPPPTFTPSTGGYEGSYGDLYHSGSVYSESTWRSAASDLDGSSSFGYGLGGIASDDPVKSSEGYIGNYNVTSRQPNRGETFHYIKRYVNWVCHGNRRSRETGQKKRGFVNSYIFINLETSAHEEIYYI 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0167 565 Gene3D - 47 129 IPR012677 -
Glsi08g0167 565 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 149 207 IPR000504 GO:0003723
Glsi08g0167 565 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 116 IPR000504 GO:0003723
Glsi08g0167 565 FunFam Heterogeneous nuclear ribonucleoprotein 1 46 128 - -
Glsi08g0167 565 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 123 IPR000504 GO:0003723
Glsi08g0167 565 CDD RRM1_hnRNPA_hnRNPD_like 49 119 - -
Glsi08g0167 565 CDD RRM2_Hrp1p 148 225 - -
Glsi08g0167 565 Gene3D - 144 230 IPR012677 -
Glsi08g0167 565 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 147 224 IPR000504 GO:0003723
Glsi08g0167 565 FunFam Heterogeneous nuclear ribonucleoprotein 1 144 231 - -
Glsi08g0167 565 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 42 514 - -
Glsi08g0167 565 SUPERFAMILY RNA-binding domain, RBD 41 145 IPR035979 GO:0003676
Glsi08g0167 565 SMART rrm1_1 48 119 IPR000504 GO:0003723
Glsi08g0167 565 SMART rrm1_1 148 220 IPR000504 GO:0003723
Glsi08g0167 565 SUPERFAMILY RNA-binding domain, RBD 146 234 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0167 Glsi-ChrGlsi08 1473773 1476945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0167 46 221 Eukaryotic Initiation Factors Gene Family AT2G23350 24.157 3.61e-09 57.8