Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0142 ATGAATGGTGTAGTCAGGCCAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTCTGAAACTTGCTGATGATATTAGCAGCATGATTTCTGAACGGAATTCATTTCCCACATCTGGATCAGAAACCCAGCGTCATGCATCTGCTATAAGAAGGAAGATAACAATATTAGGGACCAGACTTGATAGCTTGCAGTCCCTTTTGTCAAAGCTTCCTGGAAAGCAGTCTATATCTGACAAGGAGATGAATCGTCGCAAGGACATGCTTACAAATTTGAGATCAAAAGTTAACCAAATGGGTTCGACATTGAACATGTCTAACTTTACAAACAGAGATAGTTTGCTAGGATCAGATACAAAGCCAGCTGATGCAATGAACAGAACTGTTGGCCTGGATAACGGTGGACTTGTTGGATTTCAACGTCAAATTATGAAAGAGCAAGATGAGGGCCTTGAGAATTTGGAGCAGACTGTAACAAGTACAAAGCATATTGCATTGGCTGTGAATGAAGAACTGGATCTACATACTAGACTCATTGATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGATGCGGAGGGTGCAGAAGAACTTGGCAATTCTGAATAAGCGTACCAAGGGTGGTTGCTCCTGCATGTGCATGCTTTTATCCGTTGTTGGTATAGTGGTTTTGGTTCTTGTCATATTCCTGTTGGTCAAATACTTGTAA 723 0.4122 MNGVVRPMASSSDSWMKEYNEALKLADDISSMISERNSFPTSGSETQRHASAIRRKITILGTRLDSLQSLLSKLPGKQSISDKEMNRRKDMLTNLRSKVNQMGSTLNMSNFTNRDSLLGSDTKPADAMNRTVGLDNGGLVGFQRQIMKEQDEGLENLEQTVTSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRMRRVQKNLAILNKRTKGGCSCMCMLLSVVGIVVLVLVIFLLVKYL 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0142 240 CDD SNARE_Qc 147 204 - -
Glsi08g0142 240 SUPERFAMILY t-snare proteins 26 107 IPR010989 GO:0016020|GO:0016192
Glsi08g0142 240 PANTHER SYNTAXIN 38 228 IPR045242 -
Glsi08g0142 240 SUPERFAMILY SNARE fusion complex 135 205 - -
Glsi08g0142 240 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 144 206 IPR000727 -
Glsi08g0142 240 FunFam syntaxin-51 isoform X2 146 208 - -
Glsi08g0142 240 Gene3D - 146 208 - -
Glsi08g0142 240 SMART tSNARE_6 139 206 IPR000727 -
Glsi08g0142 240 Pfam SNARE domain 181 232 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0142 Glsi-ChrGlsi08 1294691 1298067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0142 6 240 SNARE and Associated Proteins AT1G79590 73.191 1.01e-124 352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0142 08 1294691 1298067 Glsi08g0142 08 1294691 1298067 ECH