Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0141 ATGTCAGACCTAGACAGGCAGATAGAGCAGCTGAAGAAGTGCGAGCCTCTCAAGGAGTCGGAAGTGAAGGCACTTTGTCTCAAGGCCATGGAAATCCTCGTCGAAGAGAGCAACGTTCAGAGGGTCGATGCCCCTGTTACCATATGTGGTGATATCCATGGGCAGTTTTATGACATGAAAGAGCTATTCAAAGTGGGAGGTGACTGCCCCAAAACAAACTACCTATTCCTCGGTGATTTTGTTGATAGAGGATTTTATTCAGTTGAAACATTTCTACTTTTGCTGGCTTTAAAGGTGAGGTATCCAGATCGAATAACACTCATTAGGGGGAACCATGAAAGCCGACAGATCACACAGGTATATGGATTCTACGATGAGTGCCTTCGTAAATATGGATCAGTCAATGTTTGGAGATATTGCACTGATATATTCGACTATTTAAGCTTGTCAGCTCTAATTGAAAACAAGATTTTTAGTGTTCATGGTGGTCTATCTCCTGCCATCTCAACATTAGATCAGATACGGACTATTGACCGGAAACAAGAAGTACCTCATGATGGTGCCATGTGTGACCTCCTATGGTCAGATCCTGAAGATATTGTGGATGGATGGGGTATGAGTCCCCGTGGTGCTGGTTACTTATTTGGTGGTAGTGTTGTTACTTCTTTTAACCACTCCAATAATATTGACTATATATGCCGTGCTCATCAGTTGGTAATGGAAGGATATAAATGGATGTTCAATAACCAGATAGTTACAGTATGGTCAGCCCCAAATTATTGCTATAGATGTGGTAATGTTGCTGCAATTCTGGAGTTGGATGAAAATCTAAACAAGCAGTTTCGTGTGTTTGATGCTGCTCCACAGGAATCGAGAGGGGCACCTGCCAAAAAACCAGCACCCGATTACTTCCTATGA 918 0.427 MSDLDRQIEQLKKCEPLKESEVKALCLKAMEILVEESNVQRVDAPVTICGDIHGQFYDMKELFKVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSVNVWRYCTDIFDYLSLSALIENKIFSVHGGLSPAISTLDQIRTIDRKQEVPHDGAMCDLLWSDPEDIVDGWGMSPRGAGYLFGGSVVTSFNHSNNIDYICRAHQLVMEGYKWMFNNQIVTVWSAPNYCYRCGNVAAILELDENLNKQFRVFDAAPQESRGAPAKKPAPDYFL 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0141 305 ProSitePatterns Serine/threonine specific protein phosphatases signature. 108 113 IPR006186 GO:0016787
Glsi08g0141 305 PRINTS Serine/threonine phosphatase family signature 228 248 IPR006186 GO:0016787
Glsi08g0141 305 PRINTS Serine/threonine phosphatase family signature 142 168 IPR006186 GO:0016787
Glsi08g0141 305 PRINTS Serine/threonine phosphatase family signature 171 198 IPR006186 GO:0016787
Glsi08g0141 305 PRINTS Serine/threonine phosphatase family signature 74 101 IPR006186 GO:0016787
Glsi08g0141 305 PRINTS Serine/threonine phosphatase family signature 107 131 IPR006186 GO:0016787
Glsi08g0141 305 PRINTS Serine/threonine phosphatase family signature 250 266 IPR006186 GO:0016787
Glsi08g0141 305 PRINTS Serine/threonine phosphatase family signature 45 72 IPR006186 GO:0016787
Glsi08g0141 305 SUPERFAMILY Metallo-dependent phosphatases 2 291 IPR029052 -
Glsi08g0141 305 SMART pp2a_7 17 288 IPR006186 GO:0016787
Glsi08g0141 305 Pfam Calcineurin-like phosphoesterase 45 237 IPR004843 GO:0016787
Glsi08g0141 305 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 2 305 IPR047129 GO:0004722
Glsi08g0141 305 FunFam Serine/threonine-protein phosphatase 1 305 - -
Glsi08g0141 305 CDD MPP_PP2A_PP4_PP6 3 288 - -
Glsi08g0141 305 Gene3D - 1 305 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0141 Glsi-ChrGlsi08 1279245 1284127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0141 24 223 Calmodulin-binding Proteins AT5G63870 36.777 4.02e-36 130