Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0140 ATGGATGCGACGCTGGCTGCTGAGTTGAAGGAGCCAGCAGAGGTGCCGCAATCGGAGGCCTTGTGGGTGAAAAGGCCGGTAGAGAATGGCGGAGTTGAGGTAGTGGATGAGAGGTCCGGTAAGAAGCCGAAGGTTGAAGCTGCGTCGAGCGGGGAATTGAAGAGAGTGGCGGAGATTATGTTAGTTTTGTCGACGATGGCGACAATGCGAGGTGGTAGGAAGGCGGCTAATGTGGAGATTGAGCTGATGAAGGAGGCTCGGATGAAGTTAGTTGAGTTGTGTCAAGGGTTGGCTCCAAAGGATATTGTGGCTAGGGAAGCTATAGGGACTGTGATTGAGGATCTCGGGTTGAATATAAAGGTTAGAGACCAGAGATTAGGTTTTCAAACTCCGAAGATATCGATAGCCGAAAGGTTTTCGCACACCAAGTGGAAGATGGAAGAATCAAAGAGGTTTTCTACACATTCTGCAACATGTACGTCCCAGCCATTGCAAACAAGCATTGGTGGAGCAGTTGAAAACCATTTGCCATCTCATACTGTGCGATTGTTTCCATCGTACAAATCTAGCCACCCAAGAATATCTACAACAGTTACCCTAGCTTCTACACCTGTGTCTCAGGTTTCTGCAGGATCTTCTGCGCCTTTGCAATATCAATCAACTAGCAATGAAATTAAACCATATATGGCTTCTGGTGGAATGCCTAGCAGTCACTTGGGTAGAAATCCGTCTTCCTTAGCATTGCCTAAAGTTGAACAACCACAGTTCAAAGTTGATAGAGGGTCAAATGGGTCTCCTTTTGTGCTACAGGTACAAGCAAATTCTTCAGCAAACCAACCTTTGGTGAATGATCCAACATGGTCAATACAGACTCAGTCTGCCTCATTAGCCAGAAGTGCACCAGAAAACAAAGTGTTTTGTCATACCTCTACCAAGGTTGAGGGATCAGTTGATCCAAATGTGTCTAGAGCAGCTCCACATATAGCAAAGGATCAGAGCTTTAGGCCATTTATAACTCAATCAGTACCTGGAAATTTGTCTAGCATGCACCAGCCGTTGCAGGGCATGAATATTGTTCAGCCTCCTTCACTTGCTAATAATCACACTGAAATTGCAAAGATTGTCCAGAAATTGTTACAACCAAAGCTTCCTGAGCATCCCACATGGACTCCTCCATCGAGGGATTATATGAATAAGGCTTTGACCTGCCAGATGTGTGAACTCACTGTCAACGAAGTGGACACTGTGCTTCTTTGTGATGCTTGTGAAAAAGGATTTCACTTGAAGTGTCTGCAGCCATCAGTCTTTAGAGGAATTCCTAGAGGTGAGTGGCACTGCATGAGGTGCTTGTCATTAAGCGGCGGAAAGCCTTTGCCTCCAAAATATGGTCGTGTCATGAGGTCCTCAAACACACCACCACAAGGGCCCTCAAACATTGTTGGAATTCAACCATCATTAGAGAAGAAAGCTGGAGTGCTAGATCCAAAAGTTGGCCCACGGAAGCTAACAACAAATGGGAGCTTTGTTGCAACTGGTGCCACTGGTAACAACAAAAACACTGAGCTTTCATCTGGCTCAATGACCACAGATGCAAAAGAAAGACAAGATAACACTTTTTCATCCAGCAGTAAACATATGGATGAGAAGCCTGACCCAAATATGTCAATAAAATTCCATAGTGTATCTATTAGTTCTTCTGTTGGCTTGCCATGTGAAAGGTCTGCTGAACAAATAAGTTCTGAGGCATCTACCTGTGAAGAGAGAACCCTTGCTTCAGAACCGGCAACTCTTCCTAAATTATCTGAGTCAGTTCAATTTAACAATTTGCAATTTTCACACAATTTACCAGTTGAGCAGACAATGCCACAAGATAATGCTGAAGTTTCAAAAGATAAATGCATTGGCAATAGTTTGACAGATAATAACAGAAAGGATTCTCTTGGAGGAGAAAGTTTGACATATGATATCAAGCGTGATAACCAAGATGTTGCACTAGCAAATTTTAATGGAAGTTCTGGAACTAATACTGAAGGTCAGTATGCTGCATCACATTCAGATGGCTCACATGTTGTAGAATGGGTTGGCGATCTTATACAACTTGTGGACGACAAAAAGTTTTACCAATCTTGCCATGTTGATGGTGTTACATATGGGCTGCAGGATCATGCTCTTATCCAATCCAGCCACGGCAAGTTAACACCTTCCAAACTTCAGTCTATGTGGGAAGATAGCAAAACTGGCTTAAAGTGGGTAAAGGTGACAATGTGTTACTTTCCTTGTGATTTGCCAGGTTGTCATCCATGCATATCTGAAGTCAATGAGGTTTATGAATCTAATAGTGATAGAATAGAAATGGCTGGCTCTATTCGAGGCCTATGTGAAGTCCTCCCAACTGATAAATTTAAACGAGAAAATGATAGACGAAGTCAGTTAGAACTTGAGGAAAGTGGTAGACTACAGCCAATTTTCCCATGCAGTTATGACCAACTTGTTGAACTTATTTTATTCCTCTTTCTTTGTTCTTGCACTGCTTTGATTACCCGACATACTACTACTCTTCATCTGCTGTGTTCATGCATGTCTCCGTGTATGTTTTATATCAAGGGAAACTGTTGGGGTAGAAAACCTACTACTGATGGTTTTATGATGAATTCAAAAAGTTATTTCAACCTGTTACCAGTTGATGCTGTTGAGCTATCATACACATGGTTATTCCATGGTTTGAGCTTTCAGACATTTGACGAGTTTGAGTCCTTTGATGTAAAATATGTAGCTGAAGCTGTAACTTAG 2790 0.4258 MDATLAAELKEPAEVPQSEALWVKRPVENGGVEVVDERSGKKPKVEAASSGELKRVAEIMLVLSTMATMRGGRKAANVEIELMKEARMKLVELCQGLAPKDIVAREAIGTVIEDLGLNIKVRDQRLGFQTPKISIAERFSHTKWKMEESKRFSTHSATCTSQPLQTSIGGAVENHLPSHTVRLFPSYKSSHPRISTTVTLASTPVSQVSAGSSAPLQYQSTSNEIKPYMASGGMPSSHLGRNPSSLALPKVEQPQFKVDRGSNGSPFVLQVQANSSANQPLVNDPTWSIQTQSASLARSAPENKVFCHTSTKVEGSVDPNVSRAAPHIAKDQSFRPFITQSVPGNLSSMHQPLQGMNIVQPPSLANNHTEIAKIVQKLLQPKLPEHPTWTPPSRDYMNKALTCQMCELTVNEVDTVLLCDACEKGFHLKCLQPSVFRGIPRGEWHCMRCLSLSGGKPLPPKYGRVMRSSNTPPQGPSNIVGIQPSLEKKAGVLDPKVGPRKLTTNGSFVATGATGNNKNTELSSGSMTTDAKERQDNTFSSSSKHMDEKPDPNMSIKFHSVSISSSVGLPCERSAEQISSEASTCEERTLASEPATLPKLSESVQFNNLQFSHNLPVEQTMPQDNAEVSKDKCIGNSLTDNNRKDSLGGESLTYDIKRDNQDVALANFNGSSGTNTEGQYAASHSDGSHVVEWVGDLIQLVDDKKFYQSCHVDGVTYGLQDHALIQSSHGKLTPSKLQSMWEDSKTGLKWVKVTMCYFPCDLPGCHPCISEVNEVYESNSDRIEMAGSIRGLCEVLPTDKFKRENDRRSQLELEESGRLQPIFPCSYDQLVELILFLFLCSCTALITRHTTTLHLLCSCMSPCMFYIKGNCWGRKPTTDGFMMNSKSYFNLLPVDAVELSYTWLFHGLSFQTFDEFESFDVKYVAEAVT 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0140 929 MobiDBLite consensus disorder prediction 537 554 - -
Glsi08g0140 929 MobiDBLite consensus disorder prediction 495 554 - -
Glsi08g0140 929 ProSiteProfiles Zinc finger PHD-type profile. 400 452 IPR019787 -
Glsi08g0140 929 Pfam PHD-finger 403 450 IPR019787 -
Glsi08g0140 929 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 16 830 - -
Glsi08g0140 929 ProSitePatterns Zinc finger PHD-type signature. 403 449 IPR019786 -
Glsi08g0140 929 MobiDBLite consensus disorder prediction 504 536 - -
Glsi08g0140 929 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 392 464 IPR013083 -
Glsi08g0140 929 SMART PHD_3 402 450 IPR001965 -
Glsi08g0140 929 Gene3D - 684 829 IPR043151 -
Glsi08g0140 929 SUPERFAMILY FYVE/PHD zinc finger 393 457 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0140 Glsi-ChrGlsi08 1269367 1275905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0140 402 450 C2H2 Transcription Factor Family AT3G01460 40.816 1.89e-06 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi08g0140 PHD 2.5e-08 CL0390