Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0125 ATGGCTAGCGAAGAGGAGAGGCTTCTGGAGACACAACTGGAGCTTCAATTGCTAGAGCAGAGAGATTCACTGTCTGCTCTCAATCAGGCTTTGGTCTCTGATCCAGCCAATCCCGAGCTTCTAGCGGTTCTAGAGGAGCTTGTTCAGGCTATCAAGGACGCAGAGGAAGGGCTTCTTCACTTAAAGCAAATTCGTCTATTACATGAAGCAGATTTAGTGCTGCATAGTAGCACTAATCTTTTTGCCGAAGAAGAGAAAGTAGAGCCACTTGATCCCACAGATGTTGAACCAGAGCCACTGGAGGAGCAATGCTATTCTGTTGGATCTAAATGTAGATTCCGTCACACTGATGGGCGTTGGTACAATGGTCAAGTAGTGCAGTTGGATAATTTAGCAGCAAAGATTTCATTCCTTACTCCTACATCTGAGAATATGTTGATCTGCAAGTTTTTTCTACAACAAAGATGTCGGTTTGGTACTAACTGTCGCCTATCACATGGAATTGATGCTCCACTGTCCTCCCTCAGAAAATATGTCCCAACTATCTGGAAGCAGTCCCTGGTTGGTTCAAGTATATGGGCAGTCTCAGATGTTAATGCTGGCATTTGGAAGGAGGCTGAGCTTGAATCCTGGGACGAACAAATTGGAGTTGGACAAGTTGTTTTCCGAGACGATGGAAGTTCTGCGAAGCTTGGGGCGGAAGCTATAGCATTATCTGAGTATGCGGAAGCGAGCAACGAAGAGAGTGATTCCAGCTTAGAACAATCTGATTCTAGTGACTATGAAGAAGAGGACTCACAAGGTTTAGGCTTTCTGGAAAGTACCAACTTGCAGCGGGGCATTCAGACAGAAACTGCTATATTTGCTAAGTGGGAAAACCACACTAGGGGCGTAGCTTCCAAAATGATGGCTAATATGGGTTACCGTGAAGGAATGGGTTTAGGTTTATCTGGTCAGGGAATGCTAGATCCCATCCCAGTGAAGGTCCTCCCACCAAAGCAATCCTTAGAACATGCTCTCGAGTCTCGTAAAGAAGAAGAGAGCAGAGAGAAGCAAGGTAAGAGACGAAGCAGGGGTGGTAAGAGAAAACGTGATAAGAAATTTGCAGAAGCAATTCGTGTAGCAAAAGAGGAAGAAGAATCCGTGTCAGATGTCTTTACACTAATAAATAACCAGCTGGCATTGCACGGTGAAGCTTTAAATGGTGGATCAGTAAAAAAGCAGCAAAGTAAAGGTTCGGCGGAAGGTAAAAAAGTTGATAGGCGAGCTCTGGTTGGTTATGAGGATGAGGTAAAGGACTTGAAGACGCGAATTGAGAAGCTTGAAGAAATGGTGAATAGAAACAGAAAAGAGAAGGCAGTTTTTGAGGCTGCTACGAGAAAACTAATTGAAACTCGCAAGGCTTTAGCAGAGGCTGAAGCAGCCCATGCCTCTGCCTCAAATGCAGTTGTTAGCAAAGAAAAAGAGAAGAGATGGCTTAAGTTTTAG 1488 0.4456 MASEEERLLETQLELQLLEQRDSLSALNQALVSDPANPELLAVLEELVQAIKDAEEGLLHLKQIRLLHEADLVLHSSTNLFAEEEKVEPLDPTDVEPEPLEEQCYSVGSKCRFRHTDGRWYNGQVVQLDNLAAKISFLTPTSENMLICKFFLQQRCRFGTNCRLSHGIDAPLSSLRKYVPTIWKQSLVGSSIWAVSDVNAGIWKEAELESWDEQIGVGQVVFRDDGSSAKLGAEAIALSEYAEASNEESDSSLEQSDSSDYEEEDSQGLGFLESTNLQRGIQTETAIFAKWENHTRGVASKMMANMGYREGMGLGLSGQGMLDPIPVKVLPPKQSLEHALESRKEEESREKQGKRRSRGGKRKRDKKFAEAIRVAKEEEESVSDVFTLINNQLALHGEALNGGSVKKQQSKGSAEGKKVDRRALVGYEDEVKDLKTRIEKLEEMVNRNRKEKAVFEAATRKLIETRKALAEAEAAHASASNAVVSKEKEKRWLKF 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0125 495 Coils Coil 424 489 - -
Glsi08g0125 495 MobiDBLite consensus disorder prediction 337 367 - -
Glsi08g0125 495 Coils Coil 1 21 - -
Glsi08g0125 495 SUPERFAMILY CCCH zinc finger 143 167 IPR036855 GO:0046872
Glsi08g0125 495 MobiDBLite consensus disorder prediction 241 267 - -
Glsi08g0125 495 Pfam G-patch domain 295 335 IPR000467 GO:0003676
Glsi08g0125 495 Pfam CCCH-type zinc finger 147 167 IPR041367 -
Glsi08g0125 495 MobiDBLite consensus disorder prediction 337 354 - -
Glsi08g0125 495 Gene3D - 118 179 - -
Glsi08g0125 495 Coils Coil 44 64 - -
Glsi08g0125 495 MobiDBLite consensus disorder prediction 253 267 - -
Glsi08g0125 495 SMART c3hfinal6 142 168 IPR000571 GO:0046872
Glsi08g0125 495 ProSiteProfiles G-patch domain profile. 295 341 IPR000467 GO:0003676
Glsi08g0125 495 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 495 - -
Glsi08g0125 495 SMART G-patch_5 293 339 IPR000467 GO:0003676
Glsi08g0125 495 ProSiteProfiles Zinc finger C3H1-type profile. 142 169 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0125 Glsi-ChrGlsi08 1141746 1149362 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi08g0125 G-patch 7.6e-12 CL0449