Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0123 ATGAGGAAAGGCAGAGGAGCCGCTGCTATCAAACCGGTGGTGGCTGCGGTTGCGGCGGTCGAACTCAACGGATCAGGGTCAAGGACAATTTTAAAAGAGCAGAGGTACCGGGGCGTGAGGAAGAGACCGTGGGGTAGATTCGCCGCCGAGATCAGAGACCCGTTGAAGAAAGCCAGGGTCTGGCTCGGCACCTTCAACTCTGCCGAGGAAGCGGCCCGGGCTTACGACGCCGCCGCCCGGACCCTCCGTGGACCCAAGGCCAAGACTAATTTCCCTCTTTCCCCTTCTCTCTCACCCGTCTGTTACCAAAACAACCCCAACGACGGCATTTTAGATCACCGGTATTACGCCGCGAACAATGGTTTTCAAGAGCACCAGATTACTCCCCAGATGCCTGCCACCAGTAGCATGAGCAGCACCTCCTTCAGTGGTCCCCGGCCGCCGTCTACCACGTTCCCGCCGGCGACAGCTACCCGGAGATACCCTCGGACGCCACCGATCGTGCCGGAGGATTGCCATAGCGACTGCGATTCGTCATCGTCGGTTATTGACGACGACGGCGGCGATATCGCGTCGTCTTCGTCGTTACGTCAACCGTTGCCTTTCGATCTTAATTTCCCACCGTTGGATGGTCCTTTCGTGGCGGGTGATGATCTACACTGTACTGCTCTCTGCCTCTGA 681 0.583 MRKGRGAAAIKPVVAAVAAVELNGSGSRTILKEQRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFNSAEEAARAYDAAARTLRGPKAKTNFPLSPSLSPVCYQNNPNDGILDHRYYAANNGFQEHQITPQMPATSSMSSTSFSGPRPPSTTFPPATATRRYPRTPPIVPEDCHSDCDSSSSVIDDDGGDIASSSSLRQPLPFDLNFPPLDGPFVAGDDLHCTALCL 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0123 226 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Glsi08g0123 226 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Glsi08g0123 226 Pfam AP2 domain 35 84 IPR001471 GO:0003700|GO:0006355
Glsi08g0123 226 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 27 186 - -
Glsi08g0123 226 Gene3D AP2/ERF domain 34 94 IPR036955 GO:0003700|GO:0006355
Glsi08g0123 226 MobiDBLite consensus disorder prediction 131 197 - -
Glsi08g0123 226 SUPERFAMILY DNA-binding domain 35 94 IPR016177 GO:0003677
Glsi08g0123 226 CDD AP2 34 94 IPR001471 GO:0003700|GO:0006355
Glsi08g0123 226 FunFam Ethylene-responsive transcription factor 2 34 93 - -
Glsi08g0123 226 MobiDBLite consensus disorder prediction 131 146 - -
Glsi08g0123 226 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Glsi08g0123 226 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0123 Glsi-ChrGlsi08 1133681 1134361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0123 1 226 AP2-EREBP Transcription Factor Family AT3G20310 57.312 4.64e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi08g0123 AP2 2.6e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0123 08 1133681 1134361 Glsi08g0123 08 1133681 1134361 ECH