Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0087 ATGGAGGCCACCTGTAGTGATTCCATTGGGAACTCAGTTTCTGCACTTTCTTCTCCTCTCATGTCCTTCAATAGGAAACGACTTGTCGTTGATGAGATGGATTTCTTCGCTGACAAGAACAATAAGACTGAATTTGATGATCAGATGGTGCACATATTGGATCTTCATGTGGATACTAGTTTAGATCTTCTTACCAAGAATATTAGTAGCAGCAGATCAACTGTGGATGATGGGGCATCGGAGACCAGGGATGTTGATAAGAGAAATGAGGCACCTTTGGTAGCTGAGTTGCAGCTGATGAATGCTGAAAATCGACGTTTGAGAGAGCTGGTTGATCAGGTGAACGATAATTACAATGCCCTACATATGCAACTTGTCAAGCTGAAACACAAGCAGCAGCATGGTCATATTAAAGGAGCCGAAGATGAGAAAAGAAGTGAAGGAGCAATGATTCCAAGGCAATTCATGGACATGGGTTTTACTGAAAAAGATGAGACTTCGCAGCTTTCTTCTGAAATGGGCAAATTGCCAGAAAGTAAAAGCATGGTTGAATTGAGGAATTGCAAGATTGAAAATAATGTCAAAGGCAGAAGGGATGAGGACGATGAAGAGAGCCCAGAAAAAGCAAAAATATTCCCAGGCTGGCTCTCCAAAAGAGTCCCTAAACTAAGTTCTACAAAGGATGCTGATCAAATTACATCAGCAGAAACCATGTCAATGATCAAGAAAGCTCGTGTATCAGTTCGAGCAAGATCAGAATCCTCAATGATTTCAGATGGATGCCAATGGAGAAAGTATGGGCAGAAGATGGCAAAAGGAAATCCCTGTCCAAGAGCTTATTATCGCTGCACTGTGGCCACTGGTTGTCCAGTACGGAAACAAGTACAGAGATGTGCTGATGATCGAAGTGTGCTAATCACAACATACGAAGGGCAGCACAACCATCCACTCCCTCCCACTGCCAAGGCAATGGCATCCACCACTTCTGCAGCTGCCTCAATGCTTCTTTCAGGATCAATGCCCAGTGCTGATCGTTGCATCTCCATCATGAGTCCAAACATAGTAGACAGTGTTGCTTCTTCTGCACTTCCACCGTGCTCTCCCAACTTCGCAACCCTCTCAGCCTCAGCTCCATTTCCAACAATCACTTTGGATCTCACTCAAAGTACTTCCACCAATTGCTCACAGCTTCCTCCAATCTTGCCTCACAGGTTCATGTCAGTTCCAAGCACTTTTGGGCAGTCATTAGTGTCTGATCAAACTAAGTTTTCTGGCTTACAAGGAAAGGAGACAGCTTCATTAGCAGATACAGTAAATGCAACGACGGCTGCTATCACTTCGGACCCCAATTTCACGGCAGCTGTTGTGGCTGCAGTAACGTCGATCATTGGGAGCTCCCATTCAAACAACAACGGTGGTGGTGCCAATACTAGGATCGGAAACCAGCAGATTGATAATACATGA 1464 0.446 MEATCSDSIGNSVSALSSPLMSFNRKRLVVDEMDFFADKNNKTEFDDQMVHILDLHVDTSLDLLTKNISSSRSTVDDGASETRDVDKRNEAPLVAELQLMNAENRRLRELVDQVNDNYNALHMQLVKLKHKQQHGHIKGAEDEKRSEGAMIPRQFMDMGFTEKDETSQLSSEMGKLPESKSMVELRNCKIENNVKGRRDEDDEESPEKAKIFPGWLSKRVPKLSSTKDADQITSAETMSMIKKARVSVRARSESSMISDGCQWRKYGQKMAKGNPCPRAYYRCTVATGCPVRKQVQRCADDRSVLITTYEGQHNHPLPPTAKAMASTTSAAASMLLSGSMPSADRCISIMSPNIVDSVASSALPPCSPNFATLSASAPFPTITLDLTQSTSTNCSQLPPILPHRFMSVPSTFGQSLVSDQTKFSGLQGKETASLADTVNATTAAITSDPNFTAAVVAAVTSIIGSSHSNNNGGGANTRIGNQQIDNT 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0087 487 SMART WRKY_cls 257 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi08g0087 487 Pfam WRKY DNA -binding domain 259 316 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi08g0087 487 FunFam probable WRKY transcription factor 31 242 319 - -
Glsi08g0087 487 MobiDBLite consensus disorder prediction 466 487 - -
Glsi08g0087 487 ProSiteProfiles WRKY domain profile. 252 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi08g0087 487 Coils Coil 97 131 - -
Glsi08g0087 487 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 68 471 IPR044810 GO:0003700
Glsi08g0087 487 SUPERFAMILY WRKY DNA-binding domain 250 318 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi08g0087 487 Gene3D WRKY domain 242 319 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0087 Glsi-ChrGlsi08 762242 765906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0087 27 476 WRKY Transcription Factor Family AT1G62300 45.000 3.00e-103 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Glsi08g0087 WRKY 2.1e-24 CL0274