Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0080 ATGGGAAACACCAGTCCTTCGGATTATAATTTGCATGTTCTAGCTGATGCTGCTGTTGAAGATCTTGAGACGACCATGAAAGAGAAGGAATCAGAAAATAGGTTCAATGACACTGATCAGACTACAAACATTCTTCCTAACGTCCGAGAACCACAGGTGGAGGAGGGAGATGGCAAGAGAATGTCTGGTTCTGATGAGGGGATTCCCATTAAGAAGAGGAGGCTATTTCTATCGAACGATGAATCTAATGAGAAGAGTAAGATCAAAGACCTGGATTCTGTTAAAATGGCGCAAAATGAAGAGGGAATGTCGGGTTCTGATGAGCGGCTTCCCATAAAGAAGAGGAGGCTATGTCTATCAAACGACGAACCTGATGAGAGGAGGGAGATTAAAGAACTGGGTTCTGTTAAAATGGACGAGAAAATGTGTCAAAGGAAAGAATCTGGTTCCCATGATGAGCCTAGAATTGGCTTCCCCTTTGCTATCTCCGTTCCCAAAAAGAAGAGAACACCTTGGAAACCAATGAATGAGGTTAATATTAGAAATAGTACTTCCAAACTATCAATAGATGAGTCTGCATTTCCTAAAGTGTTTGATCTTAATGTCAACCCACCAATAAATCAACCTCAAATTTCTAATGAAGTGGGTGATATTAGATCGGACCCACTAATAGATGTACCTAGAACTCCTGAAGTGTTTGATCTTAATGCTAATCCCCCAATGGATAAGCCCTTAATTCCTGATGAAGTGGTCGATATTAGAGCCAACCCGCCTATGGAAGAACCAGTTGTTCCTGAAATGGTTGAACTTAATGCCAACCCACAACCACAGATGAGGCATTTTGATCTTAACATCAGCCTATTGGAACCAGAGCTGCCATGGTTGTTCACGAGAAAGATAGAAGAAATGGGTGGTTATGAGGTGAAGCTAGTGATAGAGAAGCGACTGTTCAAGACTGATTTGAGCACAACCCATGCGCGCTTTTCAATACCAGAAAACCAGATTCGAAGGGAAGCCATGGACTTTGTGAGAGAGGAAGAGGTGCAACTGTTAGAACAACATGTAGCAGATAAAAAGCTTGCCGGAATGCCAGTTTTGGTGCTGGATCCGTGCGTGAGGGAGATCACTCTGATCTTGAAGAAGTGGAAGATGACACGATGCTCGGTTTATAATCTGGTTCACCAATGGAATACCATTGTGCGTAGAAATCAGCTAACACCCAATGACAAGGTGCAGCTATGGTCTTTGAGAAACCGTGATGACAAGCTCTGTTTTGCACTTATCCGGCTCTGA 1293 0.4292 MGNTSPSDYNLHVLADAAVEDLETTMKEKESENRFNDTDQTTNILPNVREPQVEEGDGKRMSGSDEGIPIKKRRLFLSNDESNEKSKIKDLDSVKMAQNEEGMSGSDERLPIKKRRLCLSNDEPDERREIKELGSVKMDEKMCQRKESGSHDEPRIGFPFAISVPKKKRTPWKPMNEVNIRNSTSKLSIDESAFPKVFDLNVNPPINQPQISNEVGDIRSDPLIDVPRTPEVFDLNANPPMDKPLIPDEVVDIRANPPMEEPVVPEMVELNANPQPQMRHFDLNISLLEPELPWLFTRKIEEMGGYEVKLVIEKRLFKTDLSTTHARFSIPENQIRREAMDFVREEEVQLLEQHVADKKLAGMPVLVLDPCVREITLILKKWKMTRCSVYNLVHQWNTIVRRNQLTPNDKVQLWSLRNRDDKLCFALIRL 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0080 430 SUPERFAMILY DNA-binding pseudobarrel domain 311 420 IPR015300 -
Glsi08g0080 430 MobiDBLite consensus disorder prediction 26 71 - -
Glsi08g0080 430 Pfam B3 domain-containing protein At2g31720-like 294 401 IPR005508 GO:0003677
Glsi08g0080 430 MobiDBLite consensus disorder prediction 52 71 - -
Glsi08g0080 430 Gene3D - 304 428 IPR015300 -
Glsi08g0080 430 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 120 428 IPR005508 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0080 Glsi-ChrGlsi08 720965 722257 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0080 291 427 B3 DNA Binding Superfamily AT1G05930 31.884 5.20e-16 76.6