Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0069 ATGGAAACCAATATTGGCGCAACGAATGATAAAAGCGAGATTATTAAAATTACCGGCGATGGCGAAGGAGGTGGTGGTGAGGTGGAGGAAATGGCCTTGAAGAAGGGACCGTGGACGGCGGAGGAGGATGCGGTGCTTATGGAATATGTGACGAAGCACGGGGAAGGGAACTGGAACGCCGTGCAAAGGAACACACGGCTGGCTCGCTGTGGCAAGAGCTGCAGGTTGAGGTGGACGAACCATTTGCGACCCAATCTGAAAAAGGGTGCTTTCTCTCGTGAGGAAGAGAAGCTCATTCTCGAGCTTCACGCTCAGTATGGCAACAAATGGGCACGTATGGCCACTCTGTTACCCGGGAGAACCGACAATGAAATCAAGAACTACTGGAACACCAGGATCAAGCGTCGCCAACGGCAAGGCCTGCCTCTTTACTCCGACAGCGCTGATCAGTCTAACACCACCAGCACGCCGGCCACCCTTTCAACGCACTCAGCCACCTCACTACCGACCACCGCCACTACTACAAACTTCGAGTTTTATCATCAAAACCATCTCCCTCCTGGACCCACCTATGCTTCTAAACCTTTCTTTGATCCCAATTCTTTGTCTTCCTCTTCCTCGCTTCCCTTTGCCTTTCACCAACCCACTCCCTTACACTGTACCAACCCATTTCGCCCCAAGCGATACCGCTCCTCCACTACAACACTCATGGATCAGCCTTTGACGATGACAACGACAACGACGTCGGCGACGACCCAGTTGGCCGATCTTGATGGGTTCAGCTTCCCGGTTCAACTCAACTCAAGTTCGTCTCAGATTTATCAAACTCCGTTGGATTCATCATCAGTTTCAGGGGTTTCGAATCCTTCTCCAATGTTCCCGACGAAATTGGAGCTCCCTTCAAACCAATTTTCTCAGTCCATAGATTCGGACTCGGATATTAATCTTTTTATGGAAATGAACAATCCTGCTTTGGAGAGCAATAGCGATTTGCTGGGCGATCTTCTGCTGCAAGCGGAAGCGATGGCATCTGGCCAGAATTCGAAGAAACGAAATTACCTGAGTTTCAGTGAAGGAAATGATTTGTTTAATGGAATTCAAGGTTTCGACGATTTACCTCTTAGCTCTGTTTACTGTTCTTCAACTCCAGGACTGAAAGCAAAGGAAGAAGTACCAGACCTGCTGACCGAATCCATGAATGACTTATCCACACTGCTTGATGCAGCGCCTTCCTCCATTCAGTTTCCGAATTGGCAAAATGACAGCGCTGCAGCAGAAATCTGCAGTGTTCAATCTTCTTCTAGTTTCAGCATGCCAGATGATAATTTTGGACTTGACACGATGAAGCCCTTAACTTCATTGTTTCCTATCACCAACACAGCAAACCCTAATGAAAATCCTACCTGCTACACTTGGGACACCTTACCTGGACTTTGCTGA 1440 0.4854 METNIGATNDKSEIIKITGDGEGGGGEVEEMALKKGPWTAEEDAVLMEYVTKHGEGNWNAVQRNTRLARCGKSCRLRWTNHLRPNLKKGAFSREEEKLILELHAQYGNKWARMATLLPGRTDNEIKNYWNTRIKRRQRQGLPLYSDSADQSNTTSTPATLSTHSATSLPTTATTTNFEFYHQNHLPPGPTYASKPFFDPNSLSSSSSLPFAFHQPTPLHCTNPFRPKRYRSSTTTLMDQPLTMTTTTTSATTQLADLDGFSFPVQLNSSSSQIYQTPLDSSSVSGVSNPSPMFPTKLELPSNQFSQSIDSDSDINLFMEMNNPALESNSDLLGDLLLQAEAMASGQNSKKRNYLSFSEGNDLFNGIQGFDDLPLSSVYCSSTPGLKAKEEVPDLLTESMNDLSTLLDAAPSSIQFPNWQNDSAAAEICSVQSSSSFSMPDDNFGLDTMKPLTSLFPITNTANPNENPTCYTWDTLPGLC 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0069 479 Gene3D - 34 87 - -
Glsi08g0069 479 Gene3D - 90 157 - -
Glsi08g0069 479 MobiDBLite consensus disorder prediction 143 167 - -
Glsi08g0069 479 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Glsi08g0069 479 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Glsi08g0069 479 SMART sant 87 135 IPR001005 -
Glsi08g0069 479 SMART sant 34 84 IPR001005 -
Glsi08g0069 479 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 82 IPR017930 -
Glsi08g0069 479 ProSiteProfiles Myb-like domain profile. 30 82 IPR001005 -
Glsi08g0069 479 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Glsi08g0069 479 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 20 431 - -
Glsi08g0069 479 FunFam MYB-related transcription factor 34 87 - -
Glsi08g0069 479 MobiDBLite consensus disorder prediction 140 167 - -
Glsi08g0069 479 SUPERFAMILY Homeodomain-like 33 129 IPR009057 -
Glsi08g0069 479 CDD SANT 37 82 IPR001005 -
Glsi08g0069 479 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Glsi08g0069 479 CDD SANT 90 131 IPR001005 -
Glsi08g0069 479 FunFam Transcription factor GAMYB 90 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0069 Glsi-ChrGlsi08 629529 632509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0069 20 479 MYB Transcription Factor Family AT4G26930 36.695 2.36e-67 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi08g0069 Myb_DNA-binding 2e-12 CL0123