Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0063 ATGGGTGGGTGTCTAAGTAAAGGCAAAGGTTCAGAGCGAGATTACAATGGTTATAGATCAATTGGTGGGGGTGCTGGAATGGACAATCAGAAAATCCATGAACCTTTTGTAAACCCATCAAGATCCCCTTCTCATCAACCTTACCAATTACCTGAAAAATATGCCCAGGCGCCATGGAAACCCTCTGTTCCGACCCCAAGCTCGAAGCCCCATCACAAGTCAGATACAATTCTGGGGAAACCCTTTGAAGATGTTAAACAGTACTATAAGATTGGGAAAGAACTGGGTAGGGGTCAATTTGGGGTGACTTATCTTTGCACTGAGAATTCAACTGGTAGGCAATATGCTTGCAAGTCCATTTCAAAGAGGAAGCTTGTTAGCAAAGCTGATAAGGAGGATATAAAGAAGGAGATTCAGATTATGCAGCATTTGAGTGGACAGCCAAACATTGTCGAGTTCAAAGGTGCTTATGAAGATACCAATTCGGTTCATCTTGTGATGGAGCTATGTGCAGGTGGTGAACTCTTTGATCGGATTATTGCCAAGGGGCATTACAGTGAAAGGGCTGCAGCTTCAATTTGCAGGCAAATAGTTAATGTTGTTCATATCTGCCACTTTATGGGTGTGATGCATAGGGATCTGAAGCCTGAGAATTTCTTGTTATCCAGTAAGGATGAACATGCACTTCTCAAAGCCACAGATTTTGGATTGTCGGTTTTCATCGAAGAAGGAAAAGTTTATCGCGATACAGTTGGGAGTGCTTATTATGTTGCCCCAGAAGTTCTACGGTGCAGATATGGGAAGGAAATGGATATATGGAGTGCAGGAGTTATATTGTATATCTTACTCAGTGGTGTACCTCCTTTTTGGGCTGAGACGGAAAAGGGAATATTTGATACCATCTTGCAAGGTCATATTGATTTTGAAAGTCAACCATGGCCAAGCATATCAAAAAGTGCCAAAGACCTTGTCTGTAAGATGCTGACACAGGACCCAAAGAAACGCATTACTTCTGCTCAGGTTCTAGAGCACCCATGGATTAGAGAAGATGGAAATGCTTCTGATAAGCCAATAGACAGTGCAGTCCTTTCCAGAATGAAGCAATTCAGAGCAATGAATAAACTAAAGAAACTTGCTCTGAAGGTCATTGCGGAGAATCTTTCTGAAGAAGAGATCCAAGGGTTAAAGGCAATGTTTACAAATATGGACACTGACAAGAGTGGTACAATCACCTATGAGGAACTAAAAGCAGGATTGCAAAGACTTGGCTCAAAGCTCACAGAGGCTGAAGTGCAGCAGCTTATGGAAGCTGCTGATGTAGATGGAAATGGCTCAATTGACTACATAGAGTTCATCACTGCTACAATGCATAGACATAAACTAGAAAGAGATGAGCATCTTTACAAGGCCTTCCAATATTTCGATAAAGATAACAGCGGTTTCATTACAAGAGATGAGCTTGAAACAGCCATGAAAGAATATGGGATGGGTGATGAAGCTACAATTAGAGAAATCATATCAGAAGTTGACACAGATAATGATGGTAGAATCAATTATGAAGAATTTTGTACAATGATGAGGAGTGGAACCCAACAAGGCAAGTTATTCTGA 1611 0.4134 MGGCLSKGKGSERDYNGYRSIGGGAGMDNQKIHEPFVNPSRSPSHQPYQLPEKYAQAPWKPSVPTPSSKPHHKSDTILGKPFEDVKQYYKIGKELGRGQFGVTYLCTENSTGRQYACKSISKRKLVSKADKEDIKKEIQIMQHLSGQPNIVEFKGAYEDTNSVHLVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDEHALLKATDFGLSVFIEEGKVYRDTVGSAYYVAPEVLRCRYGKEMDIWSAGVILYILLSGVPPFWAETEKGIFDTILQGHIDFESQPWPSISKSAKDLVCKMLTQDPKKRITSAQVLEHPWIREDGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIQGLKAMFTNMDTDKSGTITYEELKAGLQRLGSKLTEAEVQQLMEAADVDGNGSIDYIEFITATMHRHKLERDEHLYKAFQYFDKDNSGFITRDELETAMKEYGMGDEATIREIISEVDTDNDGRINYEEFCTMMRSGTQQGKLF 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0063 536 Pfam Protein kinase domain 89 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0063 536 CDD EFh_PI-PLC 395 528 - -
Glsi08g0063 536 SMART serkin_6 89 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0063 536 FunFam Calcium-dependent protein kinase 1 91 174 - -
Glsi08g0063 536 ProSitePatterns Protein kinases ATP-binding region signature. 95 118 IPR017441 GO:0005524
Glsi08g0063 536 ProSitePatterns EF-hand calcium-binding domain. 475 487 IPR018247 -
Glsi08g0063 536 CDD EFh 469 527 IPR002048 GO:0005509
Glsi08g0063 536 ProSitePatterns EF-hand calcium-binding domain. 510 522 IPR018247 -
Glsi08g0063 536 SUPERFAMILY EF-hand 386 526 IPR011992 -
Glsi08g0063 536 Gene3D Transferase(Phosphotransferase) domain 1 175 355 - -
Glsi08g0063 536 ProSiteProfiles Protein kinase domain profile. 89 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0063 536 Pfam EF-hand domain pair 465 527 IPR002048 GO:0005509
Glsi08g0063 536 Pfam EF-hand domain pair 395 455 IPR002048 GO:0005509
Glsi08g0063 536 Gene3D - 356 531 - -
Glsi08g0063 536 CDD STKc_CAMK 89 346 - -
Glsi08g0063 536 SMART efh_1 394 422 IPR002048 GO:0005509
Glsi08g0063 536 SMART efh_1 501 529 IPR002048 GO:0005509
Glsi08g0063 536 SMART efh_1 430 458 IPR002048 GO:0005509
Glsi08g0063 536 SMART efh_1 466 494 IPR002048 GO:0005509
Glsi08g0063 536 Coils Coil 412 432 - -
Glsi08g0063 536 SUPERFAMILY Protein kinase-like (PK-like) 88 354 IPR011009 -
Glsi08g0063 536 PANTHER SERINE/THREONINE-PROTEIN KINASE 83 522 - -
Glsi08g0063 536 ProSiteProfiles EF-hand calcium-binding domain profile. 426 461 IPR002048 GO:0005509
Glsi08g0063 536 ProSiteProfiles EF-hand calcium-binding domain profile. 462 497 IPR002048 GO:0005509
Glsi08g0063 536 ProSiteProfiles EF-hand calcium-binding domain profile. 390 425 IPR002048 GO:0005509
Glsi08g0063 536 ProSitePatterns EF-hand calcium-binding domain. 403 415 IPR018247 -
Glsi08g0063 536 MobiDBLite consensus disorder prediction 35 49 - -
Glsi08g0063 536 FunFam Calcium-dependent protein kinase 1 355 530 - -
Glsi08g0063 536 FunFam calcium-dependent protein kinase 1 175 354 - -
Glsi08g0063 536 MobiDBLite consensus disorder prediction 1 77 - -
Glsi08g0063 536 ProSitePatterns EF-hand calcium-binding domain. 439 451 IPR018247 -
Glsi08g0063 536 Gene3D Phosphorylase Kinase; domain 1 91 174 - -
Glsi08g0063 536 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Glsi08g0063 536 ProSiteProfiles EF-hand calcium-binding domain profile. 498 532 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0063 Glsi-ChrGlsi08 581260 591160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0063 1 536 EF-hand Containing Proteins AT3G20410 74.681 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Glsi08g0063 Pkinase 2.8e-75 CL0016