Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0061 ATGATGTTAAAAGAAGCATTTATAAGGTGGAAGGAGATTGTCTGGGCGTGTGTTTCTGCCCTCAATGGAAGTTCTGTGGTTCGGCTATTCATGAAGGCTACGGAGAGAGTTCTTTTTGCTGCATTTACCTGCGTTCTTACTCTAGGAGGGTCTTTAATGGGGACATTTGTAGGAGCCATAAAAGGGCAGACCACAGAAGCTGGTTTTCTTGATGGGGCTAGCAAGGGAGCTGTCACAGGGGCCATTGCAGCCCTAGGATTGCTGGACCTTGTGGCCGGTGATGAGCCATTGTCCAAGGTTGCCATGTTGAGAAGTTTGTTCGATGGGAAGGTCCTTATGGAATGGGTATATCCAACCTATCAATGGCATATTGGAACACCAGAAACAATCTTCAGAGAAGTATCAGATATTTATGATATCATGGGAGTGTCAGGGTTGTCCCATAATTTCATTCAAAAACTCCCATTGCATCAATTCAACTCTGGCAAAATGTTGAAACTATACAATGATTCATGCTGCTCAATCTGCTTCCAGGACTTTGAGAATGGAGAGCTAGTGAGGATACTTCCCAAATGCGACCACTTTTTTCACTTTGAGTGCATAGACAAATGGCTAATCCAACAAGGATCTTGCCCCATGTGTAGAACTTATGTTACCGATCACATTGATGAATAG 675 0.437 MMLKEAFIRWKEIVWACVSALNGSSVVRLFMKATERVLFAAFTCVLTLGGSLMGTFVGAIKGQTTEAGFLDGASKGAVTGAIAALGLLDLVAGDEPLSKVAMLRSLFDGKVLMEWVYPTYQWHIGTPETIFREVSDIYDIMGVSGLSHNFIQKLPLHQFNSGKMLKLYNDSCCSICFQDFENGELVRILPKCDHFFHFECIDKWLIQQGSCPMCRTYVTDHIDE 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0061 224 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 30 216 IPR044523 -
Glsi08g0061 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 220 IPR013083 -
Glsi08g0061 224 ProSiteProfiles Zinc finger RING-type profile. 173 215 IPR001841 -
Glsi08g0061 224 Pfam Ring finger domain 173 215 IPR001841 -
Glsi08g0061 224 SMART ring_2 173 214 IPR001841 -
Glsi08g0061 224 SUPERFAMILY RING/U-box 165 220 - -
Glsi08g0061 224 CDD RING-H2_EL5-like 172 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0061 Glsi-ChrGlsi08 568372 570470 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0061 38 218 C3H Transcription Factor Family AT5G66070 35.176 6.07e-35 122
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0061 08 568372 570470 Glsi08g0061 08 568372 570470 ECH