Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0054 ATGTCGAAAAGGAAAGAATGTGACTACGATGAGCCTGGAATTGCCTTCCACTGTCCTGTCAACATTTCCAGAATGAAAAGAACAGCAAGAATAAGAGTATCATCAAAATTCATCAATCTTGTTGATTTTCAAATTAAAATCACCGAAGAACCCGAGTTGCCATTGGAGTTCATTGAAGAGATTGAAGACATGGGTGGTTATGAGATAAAGCTAGTGATAGAGAAGCAACTGTGTGAAAGCGATTTAAAGTCATTATCAATCCCAGAAAACCAGATTCGAAAGGAAGCCACGGACTTTGTGATAGAGAAAGAAGTGGGGTTGTTAGAGCTTCGTGGAATGCCAGTGTTGGTAGTGGATCCACGTCTGAGGGAATTCAATCTGATCTTGAATAGGGGGAAGATGGGGAAATGCCCAGTTTATAATCTGGTTGACCAGTGGAATAGCATTGTGCAGCAAAATGATCTTAAACCCAACGACAAGGTACAGTTATGGTCTTTCAGAACCATTGATGATGAACTCTGTTTCGCACTGGTCAAGCTTCAACAAGAATCAGTCAATCAAGGAAACAAAAAGCATTAA 579 0.4024 MSKRKECDYDEPGIAFHCPVNISRMKRTARIRVSSKFINLVDFQIKITEEPELPLEFIEEIEDMGGYEIKLVIEKQLCESDLKSLSIPENQIRKEATDFVIEKEVGLLELRGMPVLVVDPRLREFNLILNRGKMGKCPVYNLVDQWNSIVQQNDLKPNDKVQLWSFRTIDDELCFALVKLQQESVNQGNKKH 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0054 192 SUPERFAMILY DNA-binding pseudobarrel domain 72 168 IPR015300 -
Glsi08g0054 192 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 47 184 IPR005508 GO:0003677
Glsi08g0054 192 Pfam B3 domain-containing protein At2g31720-like 59 151 IPR005508 GO:0003677
Glsi08g0054 192 Gene3D - 64 191 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0054 Glsi-ChrGlsi08 512406 512984 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0054 61 177 B3 DNA Binding Superfamily AT1G05930 29.921 1.52e-09 54.3