Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0035 ATGGCTCCGAGTTTTACATTCGAACCCCCCAGCGACGAAGAGGTCGAGTACTCTGAAGCCGAAGAACAGGAACAAAGCCAAGGAGAGGAAGAAGAAGAGCAAGACGAAGAAGAAGGAGGAGGAGTAGCACGAGTTTCGAATAAGAAATCTCAATCTCCATGGGACTTCGCTAAGTACACTGAATCGGTCGCAGACGAACATGCCCGGCGAAGCACGACCTCAGTGGATTACAAAATCTCTAAAGCCCTTAAAGAACGCTCCACCCCACTCAGAAAGCCCATAGAAGATGACAATGAGAGCTCAGAGTCTGAATCCGACAAACAAGAAGATTATAGACCAGAGGACGAAGAAGTTGAAGATAGTAATGTGGGTGAGAGCAAGTCTTTCTTCGCGCCATCTGATGGAGCTTCGTTCCATGCTGATTCATTCAGCCAGCTTCACTTGTCGCGCCCTTTGCTCCGGGCTTGTGAGGCCTTAGGATACATGAAACCAACACCAATTCAGGCAGCGTGTATCCCATCGGCATTAGCTGGTCGTGATATATGTGGAAGTGCCATTACCGGGTCCGGGAAGACTGCTGCATTTACACTACCTACACTGGAGAGGCTATTGTTCCGTCCAAAACGCATGCAGGCAATAAGGGTCCTCATTCTAACTCCAACCAGAGAATTGGCAGTCCAAGTTCACAGTATGATAGAGAAGCTTGCTCAATTTACTGATATAAGGTGTTGCCTGGTTGTTGGGGGTCTGTCAACAAAGGTGCAAGAGGCGGCCTTGAGATCAATGCCAGATATTGTTGTGGCTACTCCAGGACGCATGATAGATCATTTACGCAATTCTATGTCAGTGGATTTAGATGATCTTGCTGTTCTAATCCTCGATGAGGCAGATCGTCTTTTAGAGCTTGGATTTCATGCTGAAATTCAGGAACTTGTTGGCTCGTGTCCCAAAAGAAGGCAGACCATGCTATTTTCAGCGACAATGACTGAGGAAGTTGATAAACTTATTAAACTTTCCCTAACAAATCCCATGCGCCTTTCCGCAGACCCATCTGCAAAACGGCCAGCAACCTTGACTGAGGAGGTGGTTAGAATACGAAGAATGCGTGAAATAAATCAGGAAGGAGTTCTTCTTGCATTGTGCTTCAAAACTTTTACTTCTAAAGTGATCATCTTCAGTGGAACAAAGCAAGCTGCACATAGGTTGAAGATTATATTTGGATTAGCGGGGCTGAAAGCTGCTGAACTTCATGGAAACCTTACTCAGGCCCAGCGCCTTGAAGCTTTGGAGCAGTTCAGGAAGCAGCAAGTTGATTTTTTGGTTGCAACTGATGTGGCTGCTCGAGGCCTTGACATCATCGGTGTTCAAACAGTTATCAACTTTGCTTGTCCACGTGATCTTACCAGCTATGTTCATCGAGTGGGTCGGACTGCAAGAGCTGGCAGAGAAGGTTATGCTGTCACATTTGTGACTGATAATGACCGGTCACTTTTAAAAGCTATTGCTAAGAGGGCTGGTTCAAAGCTGAGGAGCTGCATTGTTGCAGAGCAATCGATAATTAAGTGGTCTCATATAATTGAGCAAATGGAGGATGAAATTGCTGCAGTTCTTCAAGAAGAGAGGGAAGAAAGAGCCTTAAGGAAAGCTGAAATGGAAGCAACAAAGGCTGAAAACATGATTGAACACAAGGAAGAGATCTATTCCCGCCCCAAAAAAACGTGGTTTATGACAGAGAAGGAGAAGAAGCTTGCTGCAAAAGCGGCAAAGACATCTAATGAAAAGGAAAAGAGTTCTGGGAAGGAGGTAATTAGTGCCCAACAAGCTGAAGACCTAAGAATGAAGGAAAAGAGGAAGCGAGAACGAGAGAAAAATTTGCCCAGGAAGAAGCGTAGAAAATTGGAAGCAGCTAGAGAGATGTTAGAGGATGAAGAGCATGTCGAAAAGCTAGAAGCTAATGGGAAGGATAAGAAAGAAAAGGTTGGAATGTCACTTGTTGATTTAGCATACCGGCGGGCAAAAGCAGTGAAGGCTGTGAAGAAGGCACTAGATGCTGGCAAGATTGTGAAGGGCAAAAAGAAATCTAATCATTCTTCCCAAAAGACTCCTTCAAGGACAGAAGAAATGCGGGAGCTTTTCCAAAGTGACATGAATGAGAAAAAGCCAAGAAGAAGAGGTGTTGGAACAGGAAAGAAGTCCAAGAGTTCATTCAAAAGCAAGTCAAGGTACAAGCGCAGGTAG 2238 0.4513 MAPSFTFEPPSDEEVEYSEAEEQEQSQGEEEEEQDEEEGGGVARVSNKKSQSPWDFAKYTESVADEHARRSTTSVDYKISKALKERSTPLRKPIEDDNESSESESDKQEDYRPEDEEVEDSNVGESKSFFAPSDGASFHADSFSQLHLSRPLLRACEALGYMKPTPIQAACIPSALAGRDICGSAITGSGKTAAFTLPTLERLLFRPKRMQAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEAALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFHAEIQELVGSCPKRRQTMLFSATMTEEVDKLIKLSLTNPMRLSADPSAKRPATLTEEVVRIRRMREINQEGVLLALCFKTFTSKVIIFSGTKQAAHRLKIIFGLAGLKAAELHGNLTQAQRLEALEQFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLRSCIVAEQSIIKWSHIIEQMEDEIAAVLQEEREERALRKAEMEATKAENMIEHKEEIYSRPKKTWFMTEKEKKLAAKAAKTSNEKEKSSGKEVISAQQAEDLRMKEKRKREREKNLPRKKRRKLEAAREMLEDEEHVEKLEANGKDKKEKVGMSLVDLAYRRAKAVKAVKKALDAGKIVKGKKKSNHSSQKTPSRTEEMRELFQSDMNEKKPRRRGVGTGKKSKSSFKSKSRYKRR 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0035 745 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 172 346 IPR014001 -
Glsi08g0035 745 SMART ultradead3 160 361 IPR014001 -
Glsi08g0035 745 MobiDBLite consensus disorder prediction 60 98 - -
Glsi08g0035 745 SMART helicmild6 396 481 IPR001650 -
Glsi08g0035 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 501 IPR027417 -
Glsi08g0035 745 Coils Coil 526 566 - -
Glsi08g0035 745 MobiDBLite consensus disorder prediction 585 657 - -
Glsi08g0035 745 CDD SF2_C_DEAD 358 490 - -
Glsi08g0035 745 Gene3D - 99 348 IPR027417 -
Glsi08g0035 745 Pfam Helicase conserved C-terminal domain 378 481 IPR001650 -
Glsi08g0035 745 MobiDBLite consensus disorder prediction 681 745 - -
Glsi08g0035 745 MobiDBLite consensus disorder prediction 1 126 - -
Glsi08g0035 745 MobiDBLite consensus disorder prediction 12 38 - -
Glsi08g0035 745 MobiDBLite consensus disorder prediction 627 657 - -
Glsi08g0035 745 Coils Coil 632 652 - -
Glsi08g0035 745 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 376 520 IPR001650 -
Glsi08g0035 745 Coils Coil 17 37 - -
Glsi08g0035 745 CDD DEADc_DDX27 152 347 - -
Glsi08g0035 745 MobiDBLite consensus disorder prediction 585 600 - -
Glsi08g0035 745 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 292 300 IPR000629 -
Glsi08g0035 745 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 141 169 IPR014014 GO:0003724
Glsi08g0035 745 MobiDBLite consensus disorder prediction 699 723 - -
Glsi08g0035 745 MobiDBLite consensus disorder prediction 99 121 - -
Glsi08g0035 745 Coils Coil 605 625 - -
Glsi08g0035 745 Gene3D - 356 519 IPR027417 -
Glsi08g0035 745 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 99 702 - -
Glsi08g0035 745 MobiDBLite consensus disorder prediction 724 745 - -
Glsi08g0035 745 Pfam DEAD/DEAH box helicase 165 335 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0035 Glsi-ChrGlsi08 395008 404761 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0035 96 498 Eukaryotic Initiation Factors Gene Family AT3G13920 31.527 6.51e-50 179