Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0014 ATGCCCAATATGGAGACTGAAAATTCTAATGATTCGAAAGCTGAAGAATTCAAACTCCAGGCCAATGAAGCATTCAATGTTCGCAAATATGCCCAAGCTATTGATCTATATACACAAGCAATTGAACAAAACAGTCGAAATGCTGTATACTGGGCTAATCGTGCCTTTGCCCATCTTCGCCTCGAGGAACATGGCAGTGCAATACAAGATGCTACAAATGCTATTGAAGTTGATCCTAAATATTCAAAGGGTTATTACAGACGAGGTGCTGCTCATCTTGCCATGGGGAAATTCAAGGAAGCTTTGAAGGATTTTCAGCAGGTCAAGAAAATGTGCCCTAATGATCCTGATGCAACAAAGAAATTGAAGGAATGTGAAAAAGCAGTTATGAAACTTAAATTTGAAGAAGCAATTGCCGCACCAGAGTCTGAAAGACATTCAATAGCTGAATCCATAGATTTCCGTTCTATAGGAAAGGGCCGCAATTCTTCGGTGCCAACCGAAGTGGCCATAGCCGCAGTGACTGTAGCAGTTATGGCAGCAGTGGTAATGTTGTTCAGGACATCAGTGACCACAATAGTAGCTGCAATTGTGGTGGGTTTGCTGTTGCTCCTTGGGGCATATTGGTGGATTGGCTGCAATACTGGTATATTTAGGAGTCATTTACATGACCTGGATGTGGAGCCACAATATTCAGGAGCAAGAATAGAGGGGGATGTTGTTACTTTGGATTTTGTGAAGAAAATGATGGATGATTTCAAGAATCAGAAGTGCTTACATAAACGGTATGCATTCCAGATTGTTTTGCAAACAAGAGAGATGTTGCGAGCCTTGCCTTCTCTTGTTGATATAAATGTTCCTGATAGTAGACATTTCACTGTTTGTGGTGATGTTCATGGTCAGTACTATGACCTCTTAAATATTTTTGAGCTTAATGGGCTTCCCTCAGAAGAGAATCCGTACCTGTTTAATGGTGACTTTGTTGATAGGGGATCTTTTTCCGTGGAAGTCATCCTCACTTTGTTTGCATTTAAGTGCATGTCTCCATCAGCCATATATCTAGCTAGAGGAAATCATGAGAGCAAGAGCATGAACAAGATATATGGATTTGAGGGTGAGGTACGCTCGAAGTTGAGTGACACTTTTGTGGAACTATTTGCAGAAGTATTCTGCTGTCTGCCTTTGGCACATGTGATAAATGAGAAGGTTATTGTAGTTCACGGAGGTCTTTTTAGTGTTGATGGGGTCAAACTCTCCGAGATTAGAGCAATTGATCGGTTTTGTGAGCCTCCAGAAGAAGGATTGATGTGTGAATTGTTATGGAGTGATCCACAACCTCTCCCTGGAAGAGGGCCAAGCAAACGTGGTGTGGGTCTTTCTTTTGGTGCAGATGTGACAAAAAAGTTTTTGCAGGAAAATAATTTAGATTTAGTTGTGCGATCTCATGAAGTAAAAGATGAGGGTTATGAGATTGAACATGATGGTAAACTCATAACTGTGTTTTCAGCTCCAAATTACTGTGATCAGATGGGTAACAAAGGTGCCTTTATTCGATTTGAAGGGCCCGATTTGGAGCCTAACATTGTTACATTCTCAGCAGTGCCGCACCCTGATGTCAAGCCAATGGCTTATGCAAACAATTTCCTCAGGAATTCGAAATTCCACAAACATCCTTTCTTTTCTTGCCCTCAACCTGCTAAGCTAAGCGACGACGCCGGTGGAAGTCGTATCGTGTTCGCCTCCATTCACTATTTTCTGCTGTGGCAATTTTCCCTCAGGATGTCCATGCAAAGAAAGATCCTTGTTATGCTAATGGAAGCTGGAGCGGTGGACCTCTATGCAACTAATCCAGGACCAATTGATGGTTCAGTTCTTTATGATCAAGACAAGCATGTGTCCACAGCAGTTTGGGAAGGACAGGAGCGTGGTGCTCTCAGATGTCATGAACACACTTCAAAGCTTGATCAGTGGACACTTAATCCTAAACAGATTGAATTGGTAGAGATGGCTGGGTTTGGGTACTTGAGATCAATTCCAGCTATTAGTCTAGACAATCCACTTATCTCAGCACTCGTTGAAAGGTGGAGAAGAGAAACCAATACTTTTCACTTGAATGTTGGAGAAATGACGGTAACCCTGAAAGATGTTGCGCTCTTACTTGGTCTGGCTATTGATGGAGAACCTGTAATTGGTATAACATATACCACATGCAGTTCAGTTTGTGAAAGGTATCTTGGCAGAGCACCAGAATCTGGTTACACAAGTGGTGGAATGGTGAAGCTAAGTTGGTTGAAGGAGTTCTTTTCTCGCTGTCCTGAAGATGCTCCAATAGAAGTGATAGAGCAACATACTCGTGCTTATCTTCTTTATCTTGTAGGTAGCACCATATTTTCCACCACCACAGGAAATAAAGTCCCTGTAATGTATTTGCCATTATTTGAGAATTTTGAACAATGTGGACAATATGCCTGGGGTGCAGCCGCATTAGCATTCTTGTATAGAGCACTGGGAAATGCATCACTGAAAACTCAAAGTACCATCAGTGGCTGTTTAACACTATTGCAGTGTTGGAGTTACTTTCATCTAAATATTGGGCGACCAAAGCTCAATAATGATCTGATGCATGATCGATTTCCATTCGTGCTTAGATGGAAAGGAAAACAAAGTGGCCCAACAGCAAATCGTGATGTAGTTTTTTATCGGAAGACTTTAGATTCCCTAAAACCATGTGATGTGGAGTGGCTTCCCTACAGAAATATGGACAGTATGGTAATTCCAGAACATATCAAAAGTACTTTAATTCTTGGAAGGTCAAAGACAATGTTGATATGCTTTGACAAGGCAGAAAGACATCTTCCAAATCGATGCCTAAGGCAATATGGCATGCTTCAATCAATTCCAGAGGATGTGGAGCGTTGGGAGAGGAAGAGTAGAGGAGTTGATGGTGGGGTTGACTTGTCTGGCAAAATGGAATCAGAGCTTAATGAATGGATGGACCGTCAACTCCATATTGTTGATGGTGATGAGGGTATAGATGAGAGTGAGTACATGCAGTGGTATCTGCATATTACTCGTAAGTTTGTGGGAAGGCCTATCTCTCTCTCATCTGAGTTTCAGAGAACGAATGCTGGTTTGAGGGATATTGCACACATAGCAGATACCTTCTCAACAAAAGGGTTGGATCCACAACAAATTGAATCAATTTCTAGGATAAGATATATTGCACATGAATGTTTAAGAGACCAAATTGGTGGTCCAGTCGTAATGTCAGCCACTCCACAAGTTGAACTTGGAAAAAGGGTAAGAGGAAAGGAGAGGGTTAGAAGAAAAGGTTCAGGTAAACGATTACGGAAGGATGATGCAACTCAGTATGCTGCAGTTAGTGAGGATGAGCAACCTCAGTTCTATGGCGCTGCTATTGAGGTTGATCAATTACATCTAAGTCATTTAGATGGAGACGTGGATCATGCACAATTATGTCCTGTAGACAGTGAGGTTGGTCATGTTCAGTTGATGCATGCAGATGCTGATGGTGAGAATCTCCAGCTGTGTGATGCAAATATTGAGTGTGATGCAAATATTGAGGTTGATCAATCAGAGCTAACCTATGCAGTCATTGAGGAAAACAGTATGGAGCCAAATCATGTGGCTGCCGAGGTTAATTATGAAGAACTACAGCACACATCTGGTGAGGAAATCAAGGAAGAGCATAACCATGTGACTGGTGAGGAAAATATGGAGGAAATGGGTGCTGCTAACGACATTCATGATGCACACCCTTCTGACACTCATAATGTGGTTGATGATTCTCAGCTTTGCGATGGGATCAACAACCCAACGCTTTCTGATGTTGCTGCACAGGTCAATCATACACAACTAGGCGACCCGAGTGATTTCAACTCACAACAATGCAATGCAACCAATGATGTTCATTCACAACTTCCTCACACTAACAGTGAAACCGAATCACCGTCTGCTAAAGCAGCAATTGAGGTGACTCAGCATTCTTCTCTCGAAACTCATGAGGATATTGCACAGAAAGGTGATTGTAGTGTTGCTGTATAG 4065 0.4204 MPNMETENSNDSKAEEFKLQANEAFNVRKYAQAIDLYTQAIEQNSRNAVYWANRAFAHLRLEEHGSAIQDATNAIEVDPKYSKGYYRRGAAHLAMGKFKEALKDFQQVKKMCPNDPDATKKLKECEKAVMKLKFEEAIAAPESERHSIAESIDFRSIGKGRNSSVPTEVAIAAVTVAVMAAVVMLFRTSVTTIVAAIVVGLLLLLGAYWWIGCNTGIFRSHLHDLDVEPQYSGARIEGDVVTLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLRALPSLVDINVPDSRHFTVCGDVHGQYYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEVILTLFAFKCMSPSAIYLARGNHESKSMNKIYGFEGEVRSKLSDTFVELFAEVFCCLPLAHVINEKVIVVHGGLFSVDGVKLSEIRAIDRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKKFLQENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEGPDLEPNIVTFSAVPHPDVKPMAYANNFLRNSKFHKHPFFSCPQPAKLSDDAGGSRIVFASIHYFLLWQFSLRMSMQRKILVMLMEAGAVDLYATNPGPIDGSVLYDQDKHVSTAVWEGQERGALRCHEHTSKLDQWTLNPKQIELVEMAGFGYLRSIPAISLDNPLISALVERWRRETNTFHLNVGEMTVTLKDVALLLGLAIDGEPVIGITYTTCSSVCERYLGRAPESGYTSGGMVKLSWLKEFFSRCPEDAPIEVIEQHTRAYLLYLVGSTIFSTTTGNKVPVMYLPLFENFEQCGQYAWGAAALAFLYRALGNASLKTQSTISGCLTLLQCWSYFHLNIGRPKLNNDLMHDRFPFVLRWKGKQSGPTANRDVVFYRKTLDSLKPCDVEWLPYRNMDSMVIPEHIKSTLILGRSKTMLICFDKAERHLPNRCLRQYGMLQSIPEDVERWERKSRGVDGGVDLSGKMESELNEWMDRQLHIVDGDEGIDESEYMQWYLHITRKFVGRPISLSSEFQRTNAGLRDIAHIADTFSTKGLDPQQIESISRIRYIAHECLRDQIGGPVVMSATPQVELGKRVRGKERVRRKGSGKRLRKDDATQYAAVSEDEQPQFYGAAIEVDQLHLSHLDGDVDHAQLCPVDSEVGHVQLMHADADGENLQLCDANIECDANIEVDQSELTYAVIEENSMEPNHVAAEVNYEELQHTSGEEIKEEHNHVTGEENMEEMGAANDIHDAHPSDTHNVVDDSQLCDGINNPTLSDVAAQVNHTQLGDPSDFNSQQCNATNDVHSQLPHTNSETESPSAKAAIEVTQHSSLETHEDIAQKGDCSVAV 1354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0014 1354 SUPERFAMILY TPR-like 9 140 IPR011990 GO:0005515
Glsi08g0014 1354 ProSiteProfiles TPR repeat profile. 82 115 IPR019734 GO:0005515
Glsi08g0014 1354 SUPERFAMILY Metallo-dependent phosphatases 240 548 IPR029052 -
Glsi08g0014 1354 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 46 556 - -
Glsi08g0014 1354 Gene3D Tetratricopeptide repeat domain 4 159 IPR011990 GO:0005515
Glsi08g0014 1354 SMART pp2a_7 259 535 IPR006186 GO:0016787
Glsi08g0014 1354 FunFam Serine/threonine-protein phosphatase 5 4 141 - -
Glsi08g0014 1354 Pfam PPP5 TPR repeat region 222 283 IPR013235 -
Glsi08g0014 1354 FunFam Serine/threonine-protein phosphatase 5 215 552 - -
Glsi08g0014 1354 Pfam Calcineurin-like phosphoesterase 292 484 IPR004843 GO:0016787
Glsi08g0014 1354 Gene3D - 217 552 IPR029052 -
Glsi08g0014 1354 Pfam Plant mobile domain 671 1020 IPR019557 -
Glsi08g0014 1354 Pfam Tetratricopeptide repeat 83 115 IPR001440 GO:0005515
Glsi08g0014 1354 CDD MPP_PP5_C 231 546 IPR041753 -
Glsi08g0014 1354 SMART tpr_5 48 81 IPR019734 GO:0005515
Glsi08g0014 1354 SMART tpr_5 82 115 IPR019734 GO:0005515
Glsi08g0014 1354 SMART tpr_5 14 47 IPR019734 GO:0005515
Glsi08g0014 1354 MobiDBLite consensus disorder prediction 1291 1326 - -
Glsi08g0014 1354 PRINTS Serine/threonine phosphatase family signature 321 348 IPR006186 GO:0016787
Glsi08g0014 1354 PRINTS Serine/threonine phosphatase family signature 418 445 IPR006186 GO:0016787
Glsi08g0014 1354 PRINTS Serine/threonine phosphatase family signature 496 512 IPR006186 GO:0016787
Glsi08g0014 1354 PRINTS Serine/threonine phosphatase family signature 354 378 IPR006186 GO:0016787
Glsi08g0014 1354 PRINTS Serine/threonine phosphatase family signature 474 494 IPR006186 GO:0016787
Glsi08g0014 1354 PRINTS Serine/threonine phosphatase family signature 388 414 IPR006186 GO:0016787
Glsi08g0014 1354 PRINTS Serine/threonine phosphatase family signature 291 318 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0014 Glsi-ChrGlsi08 188502 204089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0014 266 480 Calmodulin-binding Proteins AT5G63870 35.200 8.21e-37 139