Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0013 ATGGAAACGAAAAGGGTAAAAAGCAAAGTTCGAACCTCTCTCTCTTTAGCCCCATTTTCTTTCTCTCCAGGTTTCAAGAGACAGGGCATCATCCTTACTGGTGGTTCTTTCTGCATTTTGATTAGTTCCTTCCTCACCATGGACATCAACAAGCCCCAATCTCGGTTCACGCTGGGAAGGCAATCCTCTCTTGCGCCCGAGCGGCAGGGCTCTGGGGATGCCTCCGGCGGCGCGGATGATTTTAGGTCGGAGGCGTTGAACTCGAGCGTGAGGTTGATGTACTTGGCAAATGAAGGGGATTTGGACGGAATCCAGGAGCTTTTGGACTCTGGGAGTGATGCCAATTTCAGAGACATTGATGGCCGCACCGCTTTACATGTCGCCGCGTGTCAGGGCCGCACCGATGTTGTCGAATTGTTGCTTCAAAGGGGTGCTGAGGTCGAGCCACAGGACCGGTGGGGTAGCACGCCTCTAGCAGATGCAATGTATTACAAAAATCACGATGTTGTAAAGCTTTTGGAGAAACATGGTGCAAAACCTCTGATGGCTCCCATGCACGTCCAAAATTCTCTCGAAGTCCCAGAATATGAGATTGATCCTTCTGAACTTGATTTCACAAATAGTGTTCACATAACAAAGGGAACTTACTGCATTGCATTATGGCGTGGCACTCACGTTGCTGTCAAAACGCTTGAGGAGGAAGTATTCACAGATGATGACAAAGTAAAGGCATTTCATGATGAGCTTGCATTACTTCAGAAAATACGGCATCCAAATGTAGTCCAATTTTTAGGTGCTGTAACGCAAAGCACCCCAATGATGATTGTCACAGAGTATCTACCTCAGGGAGATCTTCGTGCCTACCTGAAGCGGAAAGGTGCATTAAAACCAATAATAGCTTTGAAATTTGCACTTGACATTGCAAGGGGAATGAATTATTTGCATGAAAATAAACCAGAAGCGATTATTCACCGAGATCTTGAGCCTTCAAATATACTGCGGGATGATTCTGGGCATCTGAAAGTTGCAGACTTTGGGGTTAGCAAGTTGCTCAAGGTTGCAAAAACAGTCAAAGAAGACAAACCTGTGACTAGTCAGGATACTTCATGGCGCTATGTTGCTCCAGAGGTCTATAGAAATGAGGAGTATGACACCAAGGTGGATGTCTTTTCATTTGCTCTGATATTGCAGGAGATGATTGAAGGTTGTCCACCGTTTTTGACAAAGCCGGAAAATGAAGTTCCTAAAGCATACGTTGCAAATGAGCGTCCACCATTCATAGCTTCACCTAAGCTTTATGCTTATGGACTAAAAGAGTTAATTGAGGAATGTTGGGATAAAGAGCCATGCCAGAGACCAACATTTAGGCGTATAATTGAGAGATTGGAAAACATCAGCTATCATTTTGCTCAAAAGAGGCCCTTCCAGGTTTGGAGCTGTGGTTGCTTCCAGCAACTTGAGGCCTATTTTAAGCGGTATCGTACAAATCCCAGCAGCCGGTCATCTCGCTTTATGATCAAATGA 1524 0.4534 METKRVKSKVRTSLSLAPFSFSPGFKRQGIILTGGSFCILISSFLTMDINKPQSRFTLGRQSSLAPERQGSGDASGGADDFRSEALNSSVRLMYLANEGDLDGIQELLDSGSDANFRDIDGRTALHVAACQGRTDVVELLLQRGAEVEPQDRWGSTPLADAMYYKNHDVVKLLEKHGAKPLMAPMHVQNSLEVPEYEIDPSELDFTNSVHITKGTYCIALWRGTHVAVKTLEEEVFTDDDKVKAFHDELALLQKIRHPNVVQFLGAVTQSTPMMIVTEYLPQGDLRAYLKRKGALKPIIALKFALDIARGMNYLHENKPEAIIHRDLEPSNILRDDSGHLKVADFGVSKLLKVAKTVKEDKPVTSQDTSWRYVAPEVYRNEEYDTKVDVFSFALILQEMIEGCPPFLTKPENEVPKAYVANERPPFIASPKLYAYGLKELIEECWDKEPCQRPTFRRIIERLENISYHFAQKRPFQVWSCGCFQQLEAYFKRYRTNPSSRSSRFMIK 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0013 507 Pfam Protein tyrosine and serine/threonine kinase 223 462 IPR001245 GO:0004672|GO:0006468
Glsi08g0013 507 ProSiteProfiles Ankyrin repeat region circular profile. 120 152 - -
Glsi08g0013 507 Gene3D - 81 191 IPR036770 -
Glsi08g0013 507 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 117 470 - -
Glsi08g0013 507 ProSiteProfiles Protein kinase domain profile. 170 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi08g0013 507 SUPERFAMILY Protein kinase-like (PK-like) 215 480 IPR011009 -
Glsi08g0013 507 PIRSF ILK 26 484 - -
Glsi08g0013 507 SUPERFAMILY Ankyrin repeat 91 182 IPR036770 -
Glsi08g0013 507 FunFam Os01g0748600 protein 191 482 - -
Glsi08g0013 507 Gene3D Transferase(Phosphotransferase) domain 1 202 471 - -
Glsi08g0013 507 ProSiteProfiles Ankyrin repeat profile. 120 152 IPR002110 GO:0005515
Glsi08g0013 507 FunFam serine/threonine-protein kinase STY46-like 198 281 - -
Glsi08g0013 507 Pfam Ankyrin repeats (3 copies) 92 180 IPR002110 GO:0005515
Glsi08g0013 507 SMART ANK_2a 87 116 IPR002110 GO:0005515
Glsi08g0013 507 SMART ANK_2a 153 182 IPR002110 GO:0005515
Glsi08g0013 507 SMART ANK_2a 120 149 IPR002110 GO:0005515
Glsi08g0013 507 MobiDBLite consensus disorder prediction 59 80 - -
Glsi08g0013 507 FunFam Integrin-linked protein kinase family 73 196 - -
Glsi08g0013 507 CDD STKc_MAP3K-like 211 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0013 Glsi-ChrGlsi08 170268 185334 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0013 47 483 MAP Kinase Kinase Kinase AT4G18950 66.667 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Glsi08g0013 PK_Tyr_Ser-Thr 2.3e-54 CL0016