Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g0008 ATGGCAACTGAAAAAATCAGAATGACTTTCCCATTACCGCAAAGACTGGCTAAATATAACTCCAGAATTCAAGATTATGATCAGGACATCACGTGGGAGCTTATGGAGCTTCCAAATCAAGCCCCACCACCAGAGGGATCTTCGTCCCAGAAAAAAACTGGAAGAGGGAAGATCGAAATAAAGAGGATTGAGAACACAACGAATAGGCAAGTCACCTTCTGTAAGCGTCGCAATGGGTTGCTGAAGAAAGCCTATGAATTGTCTGTTCTGTGTGATGCTGAAGTTGCTCTCGTTGTCTTCTCTAGCCGTGGCCGTTTGTACGAGTATGCCAATAACAGTGTTAGAGCAACTATTGAAAGGTACAAGAAAGCATGTGCTGCTTCCTCAAACACAGAATCTGTCTCTGAAGCTAATACGCAGTTTTACCAGCAAGAATCATCCAAGTTAAGAAGGCAGATACATGAGATTCAGAATTTAAACAGGCACATTCTTGGTGAAGCTCTTAGCTCTTTGAGTCTTAAGGAACTGAAGAACCTAGAGGGAAGGTTGGAGAAAGGTTTGAGCAGAGTTAGATCTAGGAAGCATGAAACGTTGTTTGCTGAAGTAGAGTTCATGCAGAAGCGGGAAATTGAGCTGCAAAACCATAATAATTATCTGCGAGCAAAGATAGCAGAACAAGAGCGAACTCAACAACAAGAGCAACCAAATATAATGGAGGGAACTGTGTGTGATCAGTCCATAGCTTCACAACCATATGACAGGAATTTCTTCCCTGTAAATCTCCTTCCTACTTCCAATCATCACTATTCACGTCAAGACCACACTGCTCTCCAACTTGTGTAA 843 0.4235 MATEKIRMTFPLPQRLAKYNSRIQDYDQDITWELMELPNQAPPPEGSSSQKKTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRATIERYKKACAASSNTESVSEANTQFYQQESSKLRRQIHEIQNLNRHILGEALSSLSLKELKNLEGRLEKGLSRVRSRKHETLFAEVEFMQKREIELQNHNNYLRAKIAEQERTQQQEQPNIMEGTVCDQSIASQPYDRNFFPVNLLPTSNHHYSRQDHTALQLV 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g0008 280 ProSitePatterns MADS-box domain signature. 55 109 IPR002100 GO:0003677|GO:0046983
Glsi08g0008 280 ProSiteProfiles K-box domain profile. 139 229 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi08g0008 280 MobiDBLite consensus disorder prediction 37 58 - -
Glsi08g0008 280 SMART madsneu2 53 112 IPR002100 GO:0003677|GO:0046983
Glsi08g0008 280 Pfam K-box region 137 223 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi08g0008 280 CDD MADS_MEF2_like 54 130 IPR033896 GO:0000977|GO:0045944
Glsi08g0008 280 PANTHER SERUM RESPONSE FACTOR HOMOLOG 55 232 - -
Glsi08g0008 280 PRINTS MADS domain signature 90 111 IPR002100 GO:0003677|GO:0046983
Glsi08g0008 280 PRINTS MADS domain signature 55 75 IPR002100 GO:0003677|GO:0046983
Glsi08g0008 280 PRINTS MADS domain signature 75 90 IPR002100 GO:0003677|GO:0046983
Glsi08g0008 280 FunFam agamous-like MADS-box protein AGL11 65 148 - -
Glsi08g0008 280 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 62 109 IPR002100 GO:0003677|GO:0046983
Glsi08g0008 280 ProSiteProfiles MADS-box domain profile. 53 113 IPR002100 GO:0003677|GO:0046983
Glsi08g0008 280 SUPERFAMILY SRF-like 54 131 IPR036879 GO:0003677|GO:0046983
Glsi08g0008 280 Gene3D - 65 137 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g0008 Glsi-ChrGlsi08 100450 109387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi08g0008 45 280 MADS-box Gene Family AT2G42830 69.835 2.50e-114 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi08g0008 K-box 3.5e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0008 08 100450 109387 Glsi08g0008 08 100450 109387 ECH