Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g2223 ATGGCTGCAGATTCCAAGAGCATCTCATCTGCATTGCATGAGTCTACTTCACAGGTTTGTGAGGACACAGGTCTGCTAGTTGACCATTCTGTCCAGATTTCAGTATGTGCTCTCTGCCAGAAGGCATTATCACCTGATAGTGAGATAACAAATGATCTTGCGCCCAATGGTGTATGTGGTGATTGTAAATTTCTGTTACTCGAAGACGTTGGGACCCCTGCCCAAAACTCTGGAAGAATGCTTAGGGGAAGATCCAGGTACAGCAGTTCCGAATCAATTGAGAATAGTTCATCACAGCAGCTCCCCCGTATGGCTAATACTGTGAGGCAAAATCAATCAACTGCATCTGTGGAGGACGATCCGCTTGTGGAGGGTGATACCCCCGCGTGGTTATTGCCGTATGCTAGTGCCCATACTACCCCTAGTGGGTCCAGTAGATGGAGGCGGGTTTTATCTGATACTGACAGTGATGGTTTTGATAATTGGAGTTCTCTATATGGCGAGAATGAATCAAATGGGAGTGTTAGGCAGTACAGGGTCCCCAATGGAGAGACTGATTCTTTCTCTTTCAGTGCTTATGAAGGTGACTCTGAAGTTTCTATGGATAGACATAGTTTTATAGGTACAGGAATGTTTAATTTACCAGATGAGGGAGATGAGTTTGACAGTGATACTGATATAGATCCAATGCATGTTGGCCTCACCCAATGGAACTCTGATGATATGGAAGAGGAGGAAGAAGCAGAAGAAGATGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAAGGGAATGGGACATAGATGAGGCTGAAGCCACAGGTCGCCTTCGAATATTTTTCACCTCAAGTCCAAGTGAGAGCAGGGGCCACATTAGTTGGGAGCGACGGTTTAATTCTCCTGATTTTGAGGGAATATTCAGCAGGAGAATTAGGGACACATTGCAAGCTTACAATGATCACAGCTTCACTAACTTGGAGGAGGCAGATTTACCATCTTATGGTGCAAATTTTGGGGATGATCTTGATGCTAGGCACTTTGAAGATCTGCTTGAGCATCTTGCTGAGAATAACAGCTTGAGACGAGGAGCACCTCCTGCAGCTGTGTCTTTTGTGAATAGTCTGCCCCGTGTTGTTATCAGCAAGGAACATGAGAAGCATGACGAACTAGCATGTGCCATTTGCAAGGATGCCTTAGCCCCAGGAACTGAAGTAAATCAGCTTCCCTGCTCTCACCTTTATCATGTCCACTGCATTTTGCCATGGTTGAGGGCTCGAAATTCATGCCCCCTTTGTCGTTATGAGCTTCCAACAGATGATAAGGACTATGAGGAGGGAAAGCGGAATATTGATAGTAGGAATGAGATCCATGAAACACAGCAGCTAGATGTGACGGATGAGAGTTCCTCTGATGTCTCTGTTGGAGCTGAAGCAGATGAAGAGGATGGTACTAGTCAAGGTGGAATACAGCAGAGAGAGCTTGTGAACACAGTTGCTGTAGTTAATCCTTCTGCAGTAAGGGGTGGTAGAGGAAGATGGTTTTTCCTCGCTGCTGCTCCAATTGTTAGTCTAGTGGGCATTGTTATTGTCTTATGGTTAGGTAACCCTCTAATTGAAGGAAGTAGACGGCTGGGCCACTGCAACTCACCTGGGCAAAATCATCATCGGGTTCATGTTTCTGCCTCGCCCAACCAAAGGGAGGGTAGAAGCAGAAGATGGTGGTGCCTTTTCTAA 1737 0.4629 MAADSKSISSALHESTSQVCEDTGLLVDHSVQISVCALCQKALSPDSEITNDLAPNGVCGDCKFLLLEDVGTPAQNSGRMLRGRSRYSSSESIENSSSQQLPRMANTVRQNQSTASVEDDPLVEGDTPAWLLPYASAHTTPSGSSRWRRVLSDTDSDGFDNWSSLYGENESNGSVRQYRVPNGETDSFSFSAYEGDSEVSMDRHSFIGTGMFNLPDEGDEFDSDTDIDPMHVGLTQWNSDDMEEEEEAEEDDEEEEEEEEEEEEREWDIDEAEATGRLRIFFTSSPSESRGHISWERRFNSPDFEGIFSRRIRDTLQAYNDHSFTNLEEADLPSYGANFGDDLDARHFEDLLEHLAENNSLRRGAPPAAVSFVNSLPRVVISKEHEKHDELACAICKDALAPGTEVNQLPCSHLYHVHCILPWLRARNSCPLCRYELPTDDKDYEEGKRNIDSRNEIHETQQLDVTDESSSDVSVGAEADEEDGTSQGGIQQRELVNTVAVVNPSAVRGGRGRWFFLAAAPIVSLVGIVIVLWLGNPLIEGSRRLGHCNSPGQNHHRVHVSASPNQREGRSRRWWCLF 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g2223 578 MobiDBLite consensus disorder prediction 75 122 - -
Glsi07g2223 578 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 354 440 IPR013083 -
Glsi07g2223 578 Coils Coil 238 275 - -
Glsi07g2223 578 SMART ring_2 393 433 IPR001841 -
Glsi07g2223 578 MobiDBLite consensus disorder prediction 444 465 - -
Glsi07g2223 578 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 243 438 - -
Glsi07g2223 578 MobiDBLite consensus disorder prediction 239 269 - -
Glsi07g2223 578 FunFam E3 ubiquitin-protein ligase RING1-like 354 440 - -
Glsi07g2223 578 MobiDBLite consensus disorder prediction 444 490 - -
Glsi07g2223 578 MobiDBLite consensus disorder prediction 78 118 - -
Glsi07g2223 578 Pfam Ring finger domain 392 434 IPR001841 -
Glsi07g2223 578 SUPERFAMILY RING/U-box 373 440 - -
Glsi07g2223 578 CDD RING-H2_PA-TM-RING 393 434 - -
Glsi07g2223 578 MobiDBLite consensus disorder prediction 230 270 - -
Glsi07g2223 578 ProSiteProfiles Zinc finger RING-type profile. 393 434 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g2223 Glsi-ChrGlsi07 67353334 67355070 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g2223 29 578 C3H Transcription Factor Family AT5G01980 41.844 6.80e-123 369