Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g2220 ATGTATGTAGGATCATGTTTGACTTTCGCCTTCCTAGGGTTTTGGGCATCCACCGGTATGGAATCATCTGCTACCAATTCCGACATCTTCAGAGCTCCTCCGGGAACTTCTAATTCAAGAAGATACGGAATCCTATCTGCGTCTAACATTCTTCAGGCGCCCCTGTCGGCGTTGTTGGAGTATTCGGGGCTTCTGCGAAGCAGGTCCAATCACCAAGAAGCGGACGGCTCAATTAGAGCCCGACTCTCTTCTGGTTTCCGTGATCATCTTCATAGTCGCCTCGAGACTGGCCCCAATGATGGGGAGCTCTCCATTAGGATTATTGGGGCTGGGGAACAAGATCTTGAAAGGGAAGGCAATGGTTTGGTAGTTGGGCAGGGCAGGGAAGTCGTTTCCCAGAATGAGGTATTACCCCAACCTGTGTCTCCGACTGGGATGCCCGCCACAACACTGCCACCTACTTCCGAGAGTCCAGGTTCAAGGACTGAGCGTGTTTCAGGGGAGGGCGTTTCCCAATCTGTAAATGGAACTGCAGATGCTGAAGCTGGTGAAGGAGTTGGGGCTAATGGTAGGGATTCTTCCTACCAGAGATACGATATTCAGCACGCTGCTCGCTGGATTGAGCAGGTCTTGCCTTTCTCTTTACTGCTGTTGGTGGTCTTCATCCGGCAGCATTTGCAAGGGTTTTTTGTTACAATTTGGATTGCTGCTGTCCTTTTCAAGTCAAATGAAATTCTACGGAAGCAAACGGCTCTGAAGGGAGAGAGGAAAATTCCTGTTCTGGTCGGCATTTGTATTGCATTTTCACTTCACGTGGTTGGCATCTATTGGTGGTATCAGAATGATGATCTGTTGTATCCGTTGGTCATGCTTCCTCCCAAAGCTATACCTCCTTTCTGGCATGCTATTTTCATCATCATGGTGAATGATACTTTGGTTCGCCAGGCAGCAATGGTATTTAAGTGTATATTGTTGATGTCCTACAAGAACAGCAGAGGCCGAAATTATCGTAAGCAGGGGCAAATGCTGACTTTAATTGAATATCTTCTTCTGCTATACCGTGCCTTGTTGCCAACACCAGTATGGTATCGTTTCTTTTTGAATAAAGAATATGGAAGCCTCTTTTCGTCATTGATGACAGGATTGTATCTAACGTTTAAGCTCACGTCTGTTGTTGAAAAGGTGCAATTCTTCTTTGCTTCAGTGAGAGCTTTGTCACGTAAAGAAGTGCACTATGGGGCTTATGCAACATCAGAGCAGGTCAATGCAGCCGGCGATCTTTGTGCTATTTGCCAGGAGAAGATGCATGCACCAGTTTTACTTCGTTGTAAACACATCTTCTGTGAAGACTGTGTATCAGAGTGGTTTGAGAGGGAAAGGACTTGCCCATTGTGCAGGGCTTTGGTAAAACCTGCAGATCTCAGATCATTTGGTGATGGTTCTACAAGTCTGTTTTTCCAGTTGTTCTAA 1470 0.4646 MYVGSCLTFAFLGFWASTGMESSATNSDIFRAPPGTSNSRRYGILSASNILQAPLSALLEYSGLLRSRSNHQEADGSIRARLSSGFRDHLHSRLETGPNDGELSIRIIGAGEQDLEREGNGLVVGQGREVVSQNEVLPQPVSPTGMPATTLPPTSESPGSRTERVSGEGVSQSVNGTADAEAGEGVGANGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNEILRKQTALKGERKIPVLVGICIAFSLHVVGIYWWYQNDDLLYPLVMLPPKAIPPFWHAIFIIMVNDTLVRQAAMVFKCILLMSYKNSRGRNYRKQGQMLTLIEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQFFFASVRALSRKEVHYGAYATSEQVNAAGDLCAICQEKMHAPVLLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLRSFGDGSTSLFFQLF 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g2220 489 Pfam Zinc finger, C3HC4 type (RING finger) 426 469 - -
Glsi07g2220 489 ProSitePatterns Zinc finger RING-type signature. 443 452 IPR017907 -
Glsi07g2220 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 403 476 IPR013083 -
Glsi07g2220 489 MobiDBLite consensus disorder prediction 137 188 - -
Glsi07g2220 489 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 22 489 IPR044235 GO:0061630|GO:1904294
Glsi07g2220 489 MobiDBLite consensus disorder prediction 137 178 - -
Glsi07g2220 489 CDD RING-HC_RNFT1-like 426 466 - -
Glsi07g2220 489 SMART ring_2 428 465 IPR001841 -
Glsi07g2220 489 ProSiteProfiles Zinc finger RING-type profile. 428 466 IPR001841 -
Glsi07g2220 489 SUPERFAMILY RING/U-box 421 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g2220 Glsi-ChrGlsi07 67333328 67340729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g2220 20 489 C3H Transcription Factor Family AT5G01960 67.234 0.0 631