Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g2190 ATGGTGCCATTCAGCCTATTCCTGCTTCTTCTTTCTGCTCCAATCATAGTACTTTCCGTCGACCCAGCTTTCAACGACGATGTGTTGGGGTTGATTGTCTTCAAAGCTGGTCTGCAAGACCCGAAAGCTAAACTCTCTACATGGAACGAAGATGATGATGATCCTTGCAACTGGGTCGGAGTCAAATGTGATCCGACAACCAATCGGGTATCTGCTCTTGCGCTTGATGGATTTTTTCTTTCTGGGCATATTGATCGAGGACTCTTACGATTGCAGTTCCTTCAAATTCTATCACTTTCCAAGAATAACTTTACAGGGTCTATAAACCCTGATCTTCCTCGCCTTGGGAGTTTACAAGTTGTTGACTTGAGCGAGAACAACCTATCAGGGTCAATACCTGAAGAATTTTTCCAGCAATGTGGGTCTCTAAGAGCAGTTTCATTTGCCAAAAACAAGCTTTCAGGTAAGGTTCCTGATTCTTTGAGCTCGTGCTCCTCGTTGGCCGCTGTTAACTTCTCCTCTAATCAGCTAAATGGGAAATTACCCTCTGGGATATGGTTTTTGAGGGGATTACAGTCACTTGACCTGTCAAATAACTTCCTGGAGGGAGAGATTCCTGAAGGGATTGAGAATTTGTATGACTTGAGGGAGTTAAGTCTACAGAAGAACCGCTTCACTGGCAGGCTTCCTGGGGGTATTGGAGGCTGCTTACTTTTGAAATCACTTGATTTAAGCGATAATTTTCTCTCTGGGAGACTTCCTGAGTCAATACAAAGACTCAGCTCATGCACATCCCTCAGTTTGCAGGGAAATTCATTCACAGGAGGACTTCCGGATTGGATTGGGGAATTGAAAAATCTGGAGATATTGGATCTATCAGCAAATAGGTTTGCTGGTTGGATTCCAAAATCAATAGGAAATCTTAGCTCACTGAATAAATTAAATCTATCTGGGAATCAATTTACAGGAAACTTGCCAGAGTCAATGGTAAACTGCATTAAGCTTTCGGCTCTCGACATTAATCACAATCATTTGGCAGGGCATCTTCCTTCATGGATTTTTAGGATGGGTTTACAAAGTAGTTCAGTTTCAGGGAACAGCTTCAGTAGGAGCAACTATCCTTCACTTACGTCCATACCTGCATCTTATGATGGTCTTCAGGTTTTGGATTTATCATCAAATGCATTTTCTGGTGAAATTCCATCTAGCATTGGGGCTCTGAGTAGCTTGCAAGTCTTGAATATGTCCACCAACAATATCTCTGGTTCTATTCCAGTGGGTATAGGAGAACTTAAATCTTTATACATTCTTGACTTAAGTGACAACAAGCTTAATGGAAGCATTCCTTCTGGAATAGAAAAAGCATTTTCGCTCAGGGAACTGCGGCTACAGAAGAACTTCCTAACTGGGAAAATTCCAGCCCAAATTGACAAGTGCTTGTTCCTAACATCTTTGAATCTATCTCACAACAAGCTTAGTGGTTCAATCCCTGCAGTCATTGCAAACCTGACCAATCTTCAGTATGTTGACTTGTCATGGAATGAACTCTCTGGAAGCTTACCCAAGGATCTTGCAAATCTTTCCCACCTTTTCTCTTTTAATGTCTCCTACAATCACATTGAAGGTGAGCTACCAGTGGGTGGCTTCTTCAATACCATCTCTCCCTCTTCTGTCTCCGGTAATCCATTGCTCTGTGGTTCTGTTGTCAATCACTCCTGTCCTTCTGTCCATCCCAAACCTATTGTCCTTAACCCCAACTCTTCTTACTCCAATTCTAGCACTTCTTCTCAAAACCATGGTCATAAGAAGATCATATTCAGTATCTCTGCCCTTATTGCTATTGGTGCAGCTGCTTTTATAGCCATGGGTGTGGTGGCTGTTACTGTCCTAAACATCCATGTGCGTCATTCAATGTCACGTTCTGCTGCTCCATTTGCATTATCTGGTGGCGAGGACTATAGTTGTTCCCCCACAAATGATCCAAACTATGGCAAGCTTGTAATGTTTTCTGGTGATGCTGTCTTTGATGATGGGGCACATAATCTTCTTAATAAAGACAGTGAAATTGGTCGTGGTGGATTTGGAGTTGTTTATCACACTGTCCTTCGAGATGGGCATTCTGTTGCAATCAAGAAGCTTACAGTCTCTAGTTTGATCAAGTCCCAAGAAGACTTTGAGAGGGAAGTGAAAAAGCTTGGGATGATCAGGCACCCGAATCTTGTTGGACTTAAAGGGTATTACTGGACTTCATCCTTCCAGCTCCTTATTTACGAATATTTATCCAGGGGGAGTTTGCATAAGCTTCTACATGACGATCATGGCAGAAACATCCTTTCTTGGAGACAAAGGTTTAAGATCATTCTTGGCATGGCAAAAGGGTTGGCCCATTTGCACCAAATGAACATAATCCACTATAATCTAAAATCAACGAATGTCTTGATTGATTGCTCTGGTGAGCCAAAAATAGGAGATTTTGGCTTGGTGAAGCTATTGCCAATGCTAGACCATTGTGTTTTGAGCAGCAAAATTCAAAGTGCACTTGGATATATGGCTCCTGAGTTTGCTTGCCGCACAGTGAAGATAACTGAGAAATGTGATGTACATGGTTTTGGGATCCTGGTTCTGGAGGTTGTAACCGGAAAAAGACCTGTGGAATATATGGAGGATGATGTGGTTGTTCTCTGTGACATGGTAAGGGGTGCATTGGAGGAAGGGAGGGTGGAGCAATGTGTGGATGAGAGGCTTCTGGGTAATTTTGCTGCAGAAGAAGCAATTCCTGTGATAAAATTGGGATTGATTTGTGCATCACAAGTGCCTTCAAACCGTCCAGATATGGCCGAGGCAGTGAACATATTAGAGTTGATCCAATGCCCTTCAGAAGGACAAGAGGATTTAGAATGA 2901 0.4257 MVPFSLFLLLLSAPIIVLSVDPAFNDDVLGLIVFKAGLQDPKAKLSTWNEDDDDPCNWVGVKCDPTTNRVSALALDGFFLSGHIDRGLLRLQFLQILSLSKNNFTGSINPDLPRLGSLQVVDLSENNLSGSIPEEFFQQCGSLRAVSFAKNKLSGKVPDSLSSCSSLAAVNFSSNQLNGKLPSGIWFLRGLQSLDLSNNFLEGEIPEGIENLYDLRELSLQKNRFTGRLPGGIGGCLLLKSLDLSDNFLSGRLPESIQRLSSCTSLSLQGNSFTGGLPDWIGELKNLEILDLSANRFAGWIPKSIGNLSSLNKLNLSGNQFTGNLPESMVNCIKLSALDINHNHLAGHLPSWIFRMGLQSSSVSGNSFSRSNYPSLTSIPASYDGLQVLDLSSNAFSGEIPSSIGALSSLQVLNMSTNNISGSIPVGIGELKSLYILDLSDNKLNGSIPSGIEKAFSLRELRLQKNFLTGKIPAQIDKCLFLTSLNLSHNKLSGSIPAVIANLTNLQYVDLSWNELSGSLPKDLANLSHLFSFNVSYNHIEGELPVGGFFNTISPSSVSGNPLLCGSVVNHSCPSVHPKPIVLNPNSSYSNSSTSSQNHGHKKIIFSISALIAIGAAAFIAMGVVAVTVLNIHVRHSMSRSAAPFALSGGEDYSCSPTNDPNYGKLVMFSGDAVFDDGAHNLLNKDSEIGRGGFGVVYHTVLRDGHSVAIKKLTVSSLIKSQEDFEREVKKLGMIRHPNLVGLKGYYWTSSFQLLIYEYLSRGSLHKLLHDDHGRNILSWRQRFKIILGMAKGLAHLHQMNIIHYNLKSTNVLIDCSGEPKIGDFGLVKLLPMLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDVHGFGILVLEVVTGKRPVEYMEDDVVVLCDMVRGALEEGRVEQCVDERLLGNFAAEEAIPVIKLGLICASQVPSNRPDMAEAVNILELIQCPSEGQEDLE 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g2190 966 SMART LRR_sd22_2 284 310 - -
Glsi07g2190 966 SMART LRR_sd22_2 503 529 - -
Glsi07g2190 966 SMART LRR_sd22_2 188 211 - -
Glsi07g2190 966 SMART LRR_sd22_2 431 454 - -
Glsi07g2190 966 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Glsi07g2190 966 SMART LRR_typ_2 212 236 IPR003591 -
Glsi07g2190 966 SMART LRR_typ_2 308 332 IPR003591 -
Glsi07g2190 966 SMART LRR_typ_2 527 551 IPR003591 -
Glsi07g2190 966 SMART LRR_typ_2 431 455 IPR003591 -
Glsi07g2190 966 SMART LRR_typ_2 115 139 IPR003591 -
Glsi07g2190 966 SMART LRR_typ_2 407 429 IPR003591 -
Glsi07g2190 966 SMART LRR_typ_2 284 307 IPR003591 -
Glsi07g2190 966 SMART LRR_typ_2 188 211 IPR003591 -
Glsi07g2190 966 SMART LRR_typ_2 503 526 IPR003591 -
Glsi07g2190 966 PRINTS Leucine-rich repeat signature 431 444 - -
Glsi07g2190 966 PRINTS Leucine-rich repeat signature 191 204 - -
Glsi07g2190 966 Pfam Leucine rich repeat 385 444 IPR001611 GO:0005515
Glsi07g2190 966 Pfam Leucine rich repeat 482 540 IPR001611 GO:0005515
Glsi07g2190 966 Pfam Leucine rich repeat 286 345 IPR001611 GO:0005515
Glsi07g2190 966 SUPERFAMILY Protein kinase-like (PK-like) 684 956 IPR011009 -
Glsi07g2190 966 CDD STKc_IRAK 689 955 - -
Glsi07g2190 966 Pfam Leucine Rich Repeat 239 260 IPR001611 GO:0005515
Glsi07g2190 966 Pfam Leucine Rich Repeat 191 212 IPR001611 GO:0005515
Glsi07g2190 966 Pfam Protein kinase domain 684 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g2190 966 ProSitePatterns Protein kinases ATP-binding region signature. 689 712 IPR017441 GO:0005524
Glsi07g2190 966 Gene3D Phosphorylase Kinase; domain 1 664 759 - -
Glsi07g2190 966 ProSiteProfiles Protein kinase domain profile. 683 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g2190 966 Gene3D Ribonuclease Inhibitor 303 579 IPR032675 -
Glsi07g2190 966 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 760 961 - -
Glsi07g2190 966 Gene3D Ribonuclease Inhibitor 24 302 IPR032675 -
Glsi07g2190 966 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 301 955 - -
Glsi07g2190 966 SUPERFAMILY L domain-like 43 368 - -
Glsi07g2190 966 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 304 577 - -
Glsi07g2190 966 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 25 303 - -
Glsi07g2190 966 Gene3D Transferase(Phosphotransferase) domain 1 760 964 - -
Glsi07g2190 966 SUPERFAMILY L domain-like 261 583 - -
Glsi07g2190 966 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 677 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g2190 Glsi-ChrGlsi07 67135580 67138611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g2190 8 963 Receptor kinase-like Gene Family AT5G01890 63.136 0.0 1152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Glsi07g2190 Pkinase 1.2e-41 CL0016