Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g2173 ATGCGAGAGACTAATTACCACGATGCCGTTGAAGAAGAACCGCCGTCCGTGACGGCTGGCGACGATTCCTCATCCGGGGTTGTTTTGTTCGGCAAATACGAGTTACAAAGGTTGCTGGGTGTCGGAGCTTTTGCCAAAGTTTATGAAGCGACGAATGTGAGCACCGGCCAGCACGTGGCCATCAAGGTCGTCAGCAAGCACAAAGTGTTCGAAGGTGGCCTCACGGCGAACGTTGAGAGGGAAGTCGCTATCATGCACCGTTTGCACCATCCCCACACCGTCGAGCTCTTCGAGGTCCTCGCCTCCAAAACCAAGATTTACTTCGTCATGGAATTCGCCCAGGGCGGCGAGTTGTTCGACAAGGTTGCTCAGGGACGCTTCTCCGAAGATCTCAGCCGTCGATACTTCCACCAGTTAATCTCTGCCGTTCGATACTGCCACTCCATCGGCGTCTTCCACCGCGACCTCAAGCTCGATAACCTCCTAATCGACAAGAATATGGACCTCAAGGTTTCGGACTTCGGGTTAAGCGCGCTGAAGGATCAAGTCCAACCCGACGGGCTGCTCCATACCATTTGCGGGACCCCGACTTATGTGGCCCCCGAAATCCTCGCGAAGAAAGGGTACGATGGAGCAAAGGTGGATGTGTGGTCCTGCGGCGTCATCCTCTTCGTCCTCGCCGCCGGGTATTTGCCGTTCAACGACTACAATCTCACCGTCATGTACAGGAAGATCTACCGAGGCCAGTTTCGTTTCCCGAGATGGACGTCTCCGGAGCTTCGACGCTTCCTATCGCGCTTGCTGGACCCAAATCCCCAGACAAGGATTACCGTTGATGAGATCCTCCAGGACCCTTGGTTCAGCAACGGGTACAGGGAGGTCAAAATCCACCACAAGGAATTCGAACAGGAGGAGACCCGAACCAAATTCTTGAACGCCTTCGATTTGATATCGTTCTCGTCCGGGTTTGATATGTCGGCTTTGTTCGCCGAGCCGGGAGTTTCCGATTGCGTGGAGCGAATCGTTTCGGGGGAGAAACCGGAGAAGGTAATGGAGAAGGTGGAGGAGGTAGCGAAGGCGGAGGGAGTAAGCGTGAGGAGGAAGGAGAACGGGTGCGGAGCGGAGCTGGAGGGGCAGGATGGTAATTTAATTATTCTCATGGGGATTTACCGGTTAACGGATAAATTGGTTGTCGTTGAAATTAAAAAATGGGAAAGCAGCGTTGGCAGTGGTCCCCATTTTTGGGAGGATACGTTGAAGCCGCAGCTTCATAAATTAGTCTATAAACCGGAAGCACCGATCTTCAGAGACTTCAAGTAA 1320 0.5333 MRETNYHDAVEEEPPSVTAGDDSSSGVVLFGKYELQRLLGVGAFAKVYEATNVSTGQHVAIKVVSKHKVFEGGLTANVEREVAIMHRLHHPHTVELFEVLASKTKIYFVMEFAQGGELFDKVAQGRFSEDLSRRYFHQLISAVRYCHSIGVFHRDLKLDNLLIDKNMDLKVSDFGLSALKDQVQPDGLLHTICGTPTYVAPEILAKKGYDGAKVDVWSCGVILFVLAAGYLPFNDYNLTVMYRKIYRGQFRFPRWTSPELRRFLSRLLDPNPQTRITVDEILQDPWFSNGYREVKIHHKEFEQEETRTKFLNAFDLISFSSGFDMSALFAEPGVSDCVERIVSGEKPEKVMEKVEEVAKAEGVSVRRKENGCGAELEGQDGNLIILMGIYRLTDKLVVVEIKKWESSVGSGPHFWEDTLKPQLHKLVYKPEAPIFRDFK 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g2173 439 CDD CIPK_C 312 423 - -
Glsi07g2173 439 FunFam Aurora kinase A 27 116 - -
Glsi07g2173 439 MobiDBLite consensus disorder prediction 1 23 - -
Glsi07g2173 439 SUPERFAMILY Protein kinase-like (PK-like) 29 300 IPR011009 -
Glsi07g2173 439 ProSiteProfiles Protein kinase domain profile. 33 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g2173 439 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165
Glsi07g2173 439 ProSitePatterns Protein kinases ATP-binding region signature. 39 62 IPR017441 GO:0005524
Glsi07g2173 439 FunFam Non-specific serine/threonine protein kinase 113 294 - -
Glsi07g2173 439 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 27 419 - -
Glsi07g2173 439 Gene3D Transferase(Phosphotransferase) domain 1 120 311 - -
Glsi07g2173 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Glsi07g2173 439 Gene3D Phosphorylase Kinase; domain 1 26 119 - -
Glsi07g2173 439 SMART serkin_6 33 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g2173 439 Pfam Protein kinase domain 33 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi07g2173 439 Gene3D Kinase associated domain 1, KA1 312 429 - -
Glsi07g2173 439 Pfam NAF domain 309 366 IPR004041 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g2173 Glsi-ChrGlsi07 67001203 67002522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g2173 29 431 CBL-interacting serine-threonine protein kinases AT5G01820 59.806 1.95e-170 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Glsi07g2173 Pkinase 3.7e-70 CL0016