Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g2127 ATGAAGAAGCAGAAATCCCTTGAAACGCTGAACCCATTTGATGTTCTCTCGGAGGAGCTCGTCTTCAACATCCTCGACCTCCTTGGTCCGAACCCACTTGACAAAAAGTCTTTTTCCTTAGTCTGTAAATCTTTCTATTCAATCGAAGCCAAACACCGGCGAACCCTGACGCCTCTTCGCTCCGAGCTCCTTCCTTCCATATTGAATCGGTACCCATTTGTTACCCATGTCGATCTTTCCCTTTGCCCACGAGTCACTGATAGTTCTCTGAACTTTCTAGCAAACGCTTACAAAGGCACGCTACAAAGGATAGATCTTTCGCGGTCCAGGTTCTTCTCGGCGAATGGGTTGCTGAGTTTAGCTTTTAATTGCAAGAATTTGGTAGAGTTAGACTTGTCCAATGCGACGGAGCTGAAAGACGCGGCGGCCGCTGCAGTGGCTCAGGCCAAGAATCTGGAGAAGTTATGGCTGGCAAGGTGCAAGCTAATCACGGACATGGGAGTTGGGTGTATAGCAGTTGGGTGTAGGAAGTTGAAATTGATTTGCTTAAAGTGGTGTTTGGGTGTGGGCGATTTAGGGGTGGACTTGATCGCTATCAAGTGTAAGGAACTGCGTAGTTTGGATCTCTCTTATTTGCCTATCACAGATAAATGTCTATCTTCTATTGTTAAGTTGCAATATCTTGAAGAGTTGGTTCTTGAAGGATGCTATGGCATTGATGATGACAGTCTTGATGTCTTCAAACAAGGTTGCATGACGTTAAAGAAACTTGATATCTCAGGTTGTCAGAACATAAGTCACATTGGTATGTCCGCCCTAACAAGCCGTTCTGAATGTCTAGAGCAACTTACTTTAGGAGATGGTGCTCCTGTGACACTTGCTCTTGCTGATGCTTTGAATAAACTTCCAATGCTGCAATCAATCATATTAGATAGCTGCCTGGTAACTTCTGATGGATTAAGGGCCATTGGAAGTTCATGCATGTCGCTAAGGGAGTTGAGTTTAAGCAAATGTTTGGGAGTGACAGACGAAGCTCTCTCATTCCTTGTGTCAAAACATAAAGATTTGAGGAAGCTTGACATCACATGCTGCCGCAAGATAACTGATATTTCAATTGCCAGCATTGTGAACTCCTGCATTAGTCTCACTTCCCTGAAGATGGAGTCATGTTCCCTAGTTTCAAGAGAAGCATTCGTTTTGATTGGGCAGCGATGCCATTCTCTTGAGGAGCTTGACCTAACAGATAATGAAATTGATGATGAAGGTCTTAAGTCCATTTCTGGCTGTTCCAGACTCTCCAGTCTAAAACTAGGAATCTGCCTGGACATAACCGACAGTGGACTTGCCTATGTTGGTATGTGCTGCTCAAAGTTAAAGGAGCTAGATCTCTACAGGTCTACTGGAATAACAGATTTGGGCATTTCAGCAATAGCTTGTGGTTGCCCTGGCCTTGAGATGATTAATACAGCTTATTGTACTGAAATCACCGATGGTTCCTTACTTGCCTTGACAAAATGCTTAAATTTGAAAACGCTGGAAATTCGTGGATGTCTTCTTATCACATCTATTGGTCTAGCAGCTATTGCAATGAAATGTAAGCAATTAAGTCGTCTAGACATAAAGAAGTGTTATAATGTTGATGATAGCGGGATGATTCCACTTGCTCGTTGCTCCCAAAATCTAAGACAGATAAACCTGTCATATACCTCAGTCACAGATGTGGGGCTATTGTCACTTGCTAGCATCAGTTGCCTACACACCTTTACTGTTCTGCACTTGCAGGGTGTGACTCCAAGAGGACTGGCTGCTGCTTTATTGGCATTTGGAGGGCTAAGAAAAGTGAAGCTCCATCTTTCCTTGAGAGCGTTGTTACCCGAGCCTCTTATCAAACACATAGAAGCACGTGGCTGTGTGTTTGAATGGCGAAATAAAGTTTTTCAGGCTGAGTTGGATCCCAAATGTTGGAAATTACAGCTGGAGGATCTGATGCAAATTGTTAAACCAAGGGCAATAAGAGGAGAACCTCTTTCTCTGGCCTCCTTTCCAACAATAACACAAACCATCATGAACCATAACTGGGGAACTTCTGAACTTAAAAACGATCAAAATGGACTTCCCTCAACAATTTCTCCTAGTTTGGCCTTTTCAAGCTCGTCAGAGTTCTTTCCACCCTGTCCTAATATATTTTCATGTCCCACTACTGAGGATTCGGCTGGTCAGAGCTTCAACTGGAGAAGTGAGGACCAAGAAGGAAACAAGGAGGAGGAAATTTATTACTCTGACTTCTCTCTCCAAACCCAACCAAAGCCTTCATCCCTCTTTCAATCTTCTTCAACCATGTTTCAAGCTCAGCCACTAAAGAAACAAGACACGCGGAAATTTGAGTACCCATTATCATCAACTCAGAGCTTATTTTCATCAGAAATGGAAGCAACCAAACCAGGGATACAAGGCAATTCAGCTTCTGGGTCTGATTATATGAACTATACTGATGCAGCTCAGTTTAGTAGAGACCACAGGAGATCAGAAGAGGGGTACAACTGGAGAAAGTATGGTCAAAAACAAGTGAAAGGAAGTGAAAATCCCAGAAGTTATTACAAGTGCACGAACTCGAATTGCTCAATGAAGAAGAAGGTTGAGACGACTTTGGATGGAGAAATCACTGAAATAGTATATAGGGGAAGCCATAACCATCCCAAACCCCAACCTACAAGGAGAACAAGTGCTCAGTCAATGCAAGCTTGTTCTTATTCCTGCACTAACTCTGGGGTTTATGATCAATCTGTTGTGACCTTAGGCAATCCACAAATGGAGATTGTCTCAATGCAAGAAGATTCTTCTGTCTCTGTTGGAGAAGACTTAGAGCAAATATCACGGATAAGTTACTCTGGAGGAGATGATGATGACTTTGGACTTGAGGGCAAGAGAAAGATGAGACAGAACGAAGACGATAGCTATTCAACCTTTGGTGATAGAACTGTGAGGGAACCTAGAGTTGTAGTTCAAACAAGAACTGAAATTGACATACTTGATGATGGCTATAGATGGAGGAAATATGGACAGAAAGTAGTTAAAGGAAATCCAAACCCAAGTCTGGAGGTATTGCTAGGGAGCTACTACAAGTGCACAGCCCAAGGTTGTACGGTGAGAAAACATGTTGAGCGGGCTGCACACGACAAGAATGCAGTGATCACAACTTATGAAGGGAAGCACAACCATGATGTTCCTCCAGCACGAGGCAGCAGCGCAGGTTATAATATAAACAGAACTTCACTGAATAGCAACACCGGCATTGCCACTGCCCCTATAAGGCCCTCTGTGATGACCAATTATTCTTCTAGCCCATCAACTTTTACAAATTCTCTTTACAATGCAAGGCCACCTGCACCGCTAACATATCAAAGTCAAGAGCCATTTCCCCCAGAGATTTTGCAGAGCCCTGCAAGTTTCGGGCACTCGGCTTTTGGAAGATCAAATGGCTCATTCACCAATCAAGCACAAAAGGATGATTCATTCCTTCAGTCATTTCTGTCCAAGAACCACTGA 3546 0.4334 MKKQKSLETLNPFDVLSEELVFNILDLLGPNPLDKKSFSLVCKSFYSIEAKHRRTLTPLRSELLPSILNRYPFVTHVDLSLCPRVTDSSLNFLANAYKGTLQRIDLSRSRFFSANGLLSLAFNCKNLVELDLSNATELKDAAAAAVAQAKNLEKLWLARCKLITDMGVGCIAVGCRKLKLICLKWCLGVGDLGVDLIAIKCKELRSLDLSYLPITDKCLSSIVKLQYLEELVLEGCYGIDDDSLDVFKQGCMTLKKLDISGCQNISHIGMSALTSRSECLEQLTLGDGAPVTLALADALNKLPMLQSIILDSCLVTSDGLRAIGSSCMSLRELSLSKCLGVTDEALSFLVSKHKDLRKLDITCCRKITDISIASIVNSCISLTSLKMESCSLVSREAFVLIGQRCHSLEELDLTDNEIDDEGLKSISGCSRLSSLKLGICLDITDSGLAYVGMCCSKLKELDLYRSTGITDLGISAIACGCPGLEMINTAYCTEITDGSLLALTKCLNLKTLEIRGCLLITSIGLAAIAMKCKQLSRLDIKKCYNVDDSGMIPLARCSQNLRQINLSYTSVTDVGLLSLASISCLHTFTVLHLQGVTPRGLAAALLAFGGLRKVKLHLSLRALLPEPLIKHIEARGCVFEWRNKVFQAELDPKCWKLQLEDLMQIVKPRAIRGEPLSLASFPTITQTIMNHNWGTSELKNDQNGLPSTISPSLAFSSSSEFFPPCPNIFSCPTTEDSAGQSFNWRSEDQEGNKEEEIYYSDFSLQTQPKPSSLFQSSSTMFQAQPLKKQDTRKFEYPLSSTQSLFSSEMEATKPGIQGNSASGSDYMNYTDAAQFSRDHRRSEEGYNWRKYGQKQVKGSENPRSYYKCTNSNCSMKKKVETTLDGEITEIVYRGSHNHPKPQPTRRTSAQSMQACSYSCTNSGVYDQSVVTLGNPQMEIVSMQEDSSVSVGEDLEQISRISYSGGDDDDFGLEGKRKMRQNEDDSYSTFGDRTVREPRVVVQTRTEIDILDDGYRWRKYGQKVVKGNPNPSLEVLLGSYYKCTAQGCTVRKHVERAAHDKNAVITTYEGKHNHDVPPARGSSAGYNINRTSLNSNTGIATAPIRPSVMTNYSSSPSTFTNSLYNARPPAPLTYQSQEPFPPEILQSPASFGHSAFGRSNGSFTNQAQKDDSFLQSFLSKNH 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g2127 1181 SMART LRR_CC_2 175 200 IPR006553 -
Glsi07g2127 1181 SMART LRR_CC_2 429 454 IPR006553 -
Glsi07g2127 1181 SMART LRR_CC_2 201 225 IPR006553 -
Glsi07g2127 1181 SMART LRR_CC_2 481 506 IPR006553 -
Glsi07g2127 1181 SMART LRR_CC_2 405 428 IPR006553 -
Glsi07g2127 1181 SMART LRR_CC_2 251 276 IPR006553 -
Glsi07g2127 1181 SMART LRR_CC_2 353 378 IPR006553 -
Glsi07g2127 1181 SMART LRR_CC_2 558 582 IPR006553 -
Glsi07g2127 1181 SMART LRR_CC_2 150 174 IPR006553 -
Glsi07g2127 1181 SMART LRR_CC_2 98 123 IPR006553 -
Glsi07g2127 1181 SMART LRR_CC_2 379 404 IPR006553 -
Glsi07g2127 1181 SMART LRR_CC_2 124 149 IPR006553 -
Glsi07g2127 1181 SMART LRR_CC_2 532 557 IPR006553 -
Glsi07g2127 1181 SMART LRR_CC_2 327 352 IPR006553 -
Glsi07g2127 1181 SMART LRR_CC_2 71 96 IPR006553 -
Glsi07g2127 1181 SMART LRR_CC_2 302 326 IPR006553 -
Glsi07g2127 1181 SMART LRR_CC_2 455 480 IPR006553 -
Glsi07g2127 1181 SMART LRR_CC_2 507 531 IPR006553 -
Glsi07g2127 1181 ProSiteProfiles WRKY domain profile. 1005 1076 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi07g2127 1181 FunFam WRKY transcription factor 832 902 - -
Glsi07g2127 1181 SUPERFAMILY RNI-like 294 595 - -
Glsi07g2127 1181 ProSiteProfiles WRKY domain profile. 843 901 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi07g2127 1181 Gene3D Ribonuclease Inhibitor 400 638 IPR032675 -
Glsi07g2127 1181 SMART WRKY_cls 842 900 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi07g2127 1181 SMART WRKY_cls 1010 1075 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi07g2127 1181 SUPERFAMILY WRKY DNA-binding domain 839 901 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi07g2127 1181 Gene3D WRKY domain 828 902 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi07g2127 1181 SUPERFAMILY WRKY DNA-binding domain 1002 1076 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi07g2127 1181 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 778 1101 IPR044810 GO:0003700
Glsi07g2127 1181 Gene3D Ribonuclease Inhibitor 197 292 IPR032675 -
Glsi07g2127 1181 Gene3D Ribonuclease Inhibitor 8 196 IPR032675 -
Glsi07g2127 1181 Pfam WRKY DNA -binding domain 844 899 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi07g2127 1181 Pfam WRKY DNA -binding domain 1011 1073 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi07g2127 1181 Coils Coil 135 155 - -
Glsi07g2127 1181 Gene3D WRKY domain 997 1069 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi07g2127 1181 MobiDBLite consensus disorder prediction 1151 1181 - -
Glsi07g2127 1181 Gene3D Ribonuclease Inhibitor 293 399 IPR032675 -
Glsi07g2127 1181 Pfam Leucine Rich repeat 558 580 IPR001611 GO:0005515
Glsi07g2127 1181 Pfam Leucine Rich repeat 251 273 IPR001611 GO:0005515
Glsi07g2127 1181 Pfam Leucine Rich repeat 505 529 IPR001611 GO:0005515
Glsi07g2127 1181 Pfam Leucine Rich repeat 405 427 IPR001611 GO:0005515
Glsi07g2127 1181 Pfam Leucine Rich repeat 326 349 IPR001611 GO:0005515
Glsi07g2127 1181 SUPERFAMILY RNI-like 60 285 - -
Glsi07g2127 1181 MobiDBLite consensus disorder prediction 1144 1181 - -
Glsi07g2127 1181 FunFam F-box/LRR-repeat protein 3 401 640 - -
Glsi07g2127 1181 CDD F-box_AtTIR1-like 14 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g2127 Glsi-ChrGlsi07 65633369 65643874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g2127 777 1113 WRKY Transcription Factor Family AT2G38470 49.284 3.38e-84 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Glsi07g2127 WRKY 1.7e-20 CL0274