Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g2121 ATGACCCAAGCTAAAATCCGTATTCTTTCACGTTACACTGTAAAAGGCTGCTCGTCCCACTCCCATTTGGCTCTTCGTGTTGAGTTTTCTCGGCGAGCCTTTCTCTCTCTCTGTGTCTCTGTACCCTTTACCGACAAACTTCCAGAGATCACTTTACGGATGGGGACAGGGAGGAAAAATCAATCTATTTATGTCAGTGGGACGTCACCTTTCTCTTCAAGTTCAGTAGTCAGTTCTGTATGTGGCAGAAATTTGAGGAAGAACCAACTTGGTGGTGTCATATTTGGTTGCAAGAACAGTACCATAAAAGAATGCCTATCTAAACAACTCTTTGGCTTACCAGCTCAGCATTTTTCCTATGTCAAGAATATTGATCCTGGATTGCCTCTCTTTCTATTCAACTATAGTGACAGGAAGCTTCATGGAATTTTTGAGGCGGCTAGCAAGGGGAAAATGTTTATAGACCCTTATGGATGGACTGCTGATGGCTCAGAGAGAACACAGTATCCTGCACAGGTGCAAATTCGTGTCCGGCTTCAGTGCCAGCCACTGTCTGAAGATAAATTCAGACAAGTAATTGCAGACAACTACTACATTAATAATCACTTCTGGTTTGAGCTAGACCATGGACAAAGCAGCAAGCTAATGTCCTTATTAGCCTCTTTAGCAATTGGCCCAGGTACTTGTATACCACAGAACACAATAAAGTGGACAAATGTATCTCAATCTCGGCCATCCCATGAAACTTCAGGAGAAGGGGAAGCATTTAAAACACTAAAATCTGAGACAGAGCATCCTACTCACTTAAGCAAGAAATCAGATTCAACTGAAATTGCTCCTTCTTTGGATGCTGTTGAAGACATGCCGCAATTTGATTCTCAAATAGTTGAGGAGGAAGTAGAACAGGATGAGAAATCTCTTATATTCATGAAACTAAAAGAATTGGCTTCAAAACGTGAAAGTCAAGACCTTTCCTTGTCAGATAATGTACAAGATAGTCTTGATGTGAATAATATGAACTTTGCAGAGAAGGGTAATCTGGTGGTATCAACTAGTTTAGAGAAGAAGGAAGAATGTCCCAGTCCTCCATTTGAGTATCAGTATATCATAGCTCAGTTGATGCAAGACGTCAAAGAACTGACAGCTTTCAAGACAGGACAAACTCAGAAGTATTGTTATCTGGAGCAGAAGCTGGTGGAGGCAGAGTTGGAAATTCAACATCTAAAAGATCGTTGTACTATGTTAGAGTCTGCATGTAATCTTTCTCTGGAACACGTTGAGGAGACAGTTATCCAGTCTTCTGATCAGCAGCATTTAGACCTTAAAGAGTCCTTATTCTTAATAGGAGGATATAATGGAGAATCATGGTTAGCAGCCATGGATTTGTATTGTCCTTCCCTCAATGTGATAAAATCTCTAAAGCCTATGAGCTCAGTTCGCTCATATGCTTCAGCTGTGCAGTTGAATAGTGAGCTTTATGTGTTTGGTGGGGGAAATGGTTATGTTTGGTATGACACAGTTGAGTCATATAGTCCAATTTGTGACAAGTGGACACTGTGCCCCTCTTTGAATCGGAAGAAAGGAAGCTTGGCTGGAGCTGCTTTAAGCAACAAACTATTTGCCTTTGGTGGGGGCAATGGAGTTGACTGCTTTTCAGATGTTGAGATGCTTGATCTAGACATAGGACGATGGATCTCTACACGTTCAATGCTTGACAAGAGGTTTGCTCTTGCTGCAGTGGAACTCAATGGTGTGCTTTATGCCACTGGCGGATTTGATGGGAATGACTATCTGCAGTCTGCTGAAAGATTTGATCCCAGGGAACATGCTTGGACCAAAATAGCAAACATGAATACAAAGCGGGGCTGCCACTCATTGGTTGTTCTCGATGAAAAGTTGTATGCTCTCGGTGGATTTGATGGAGGCACAATGGTTTCAAGTGTTGAAGTGTTTGATCCCCGTCTTGGTTCATGGATGACAGTGGAACCCATGAATCATCCCAGGGGATATTCTGCTGCTGCTGTTATCAAGGATTCCATTTATGTGATTGGGGGAGTTAAAGCAGGCGAAGACATTGTAGATACGGTTGAGAATTATAAGGTCGGTCAGGGATGGCAAGAAACTTGCCCAACAGCAGTTGGCAAAAGGTGTTTCTTGTCAGCTATTGCCCTGCATGATTTTGCATTTAGTTACCATAATGCCATGGGATTTTGTAGAGCTGAAAGCTCGTATGATACCAGTCTTAGTCTTTTTTCTAGTCAACCGAGGGGATTTATGGTAATAAATGGTGTTAATAACAGCAATCACCTCTCAGAAACCAAGTGCTAA 2328 0.4205 MTQAKIRILSRYTVKGCSSHSHLALRVEFSRRAFLSLCVSVPFTDKLPEITLRMGTGRKNQSIYVSGTSPFSSSSVVSSVCGRNLRKNQLGGVIFGCKNSTIKECLSKQLFGLPAQHFSYVKNIDPGLPLFLFNYSDRKLHGIFEAASKGKMFIDPYGWTADGSERTQYPAQVQIRVRLQCQPLSEDKFRQVIADNYYINNHFWFELDHGQSSKLMSLLASLAIGPGTCIPQNTIKWTNVSQSRPSHETSGEGEAFKTLKSETEHPTHLSKKSDSTEIAPSLDAVEDMPQFDSQIVEEEVEQDEKSLIFMKLKELASKRESQDLSLSDNVQDSLDVNNMNFAEKGNLVVSTSLEKKEECPSPPFEYQYIIAQLMQDVKELTAFKTGQTQKYCYLEQKLVEAELEIQHLKDRCTMLESACNLSLEHVEETVIQSSDQQHLDLKESLFLIGGYNGESWLAAMDLYCPSLNVIKSLKPMSSVRSYASAVQLNSELYVFGGGNGYVWYDTVESYSPICDKWTLCPSLNRKKGSLAGAALSNKLFAFGGGNGVDCFSDVEMLDLDIGRWISTRSMLDKRFALAAVELNGVLYATGGFDGNDYLQSAERFDPREHAWTKIANMNTKRGCHSLVVLDEKLYALGGFDGGTMVSSVEVFDPRLGSWMTVEPMNHPRGYSAAAVIKDSIYVIGGVKAGEDIVDTVENYKVGQGWQETCPTAVGKRCFLSAIALHDFAFSYHNAMGFCRAESSYDTSLSLFSSQPRGFMVINGVNNSNHLSETKC 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g2121 775 Pfam Development and cell death domain 91 218 IPR013989 -
Glsi07g2121 775 PANTHER - 78 722 IPR044832 GO:0034976
Glsi07g2121 775 SMART dcd 88 221 IPR013989 -
Glsi07g2121 775 SMART kelc_smart 538 584 IPR006652 GO:0005515
Glsi07g2121 775 SMART kelc_smart 632 678 IPR006652 GO:0005515
Glsi07g2121 775 SMART kelc_smart 444 490 IPR006652 GO:0005515
Glsi07g2121 775 SMART kelc_smart 679 726 IPR006652 GO:0005515
Glsi07g2121 775 SMART kelc_smart 491 537 IPR006652 GO:0005515
Glsi07g2121 775 SMART kelc_smart 585 631 IPR006652 GO:0005515
Glsi07g2121 775 Gene3D - 438 572 IPR015915 GO:0005515
Glsi07g2121 775 Pfam Kelch motif 533 570 IPR006652 GO:0005515
Glsi07g2121 775 Pfam Kelch motif 621 665 IPR006652 GO:0005515
Glsi07g2121 775 Pfam Kelch motif 577 618 IPR006652 GO:0005515
Glsi07g2121 775 Pfam Kelch motif 480 524 IPR006652 GO:0005515
Glsi07g2121 775 Gene3D - 573 771 IPR015915 GO:0005515
Glsi07g2121 775 SUPERFAMILY Kelch motif 443 722 IPR015915 GO:0005515
Glsi07g2121 775 MobiDBLite consensus disorder prediction 250 272 - -
Glsi07g2121 775 ProSiteProfiles DCD domain profile. 88 221 IPR013989 -
Glsi07g2121 775 Coils Coil 398 418 - -
Glsi07g2121 775 MobiDBLite consensus disorder prediction 241 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g2121 Glsi-ChrGlsi07 65574306 65581350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g2121 586 684 EF-hand Containing Proteins AT4G39560 31.429 1.20e-07 52.0