Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g2113 ATGAATATCATTTCAGCTTTAGTTGAAGTTGCTATAAGTGGGAAGTCACGGAAGAAACGCAGGGGTGGAAGCGGGTCTGTGTTAGATACTCTGGAAAAGTGGAAAAAGCATAACAGCCAACTTGATTTTTCCAACAAGAGAGTGAAAGAGATTCACAAAGTTCCTGCAAGGGGCTCAAAGAAAGGGTGCATGAGAGGTAAAGGAGGGCCTCAGAATTCTGATTGCAAGTTCAGAGGAGTGAGACAGAGGATCTGGGGAAAATGGGTTGCTGAAATTCGAGAACCTATTAAAAGTAAAGATGTGGGTAAGAAAGTAAATAGACTTTGGCTTGGTACTTTTTCCACTGCAGTTGAAGCTGCTCTTGCTTATGATGAAGCTGCTAAGGCTATATATGGCCCTTTTGCCCGTCTGAACTTTCCTGAGAATAATGGAGAATCAATTTGCTCTATTGAATCATCAACTTTGGAAGACCCTGGGGACAAAATCAATTATTCTGAGGTTGAAAATTTGGAGGAAACAGTGGAAAAACACGATCTTTCTGAGGTTTGTGTGGCTAACAATATAGAGGAACGGGTACCGATTGGCGTTTTTCATAGGCCTTTCTATGATATTGAAGCCGAAATCCTTGGAGAAAGTGAAGGAACAAAGGGAGAACCAGAGAAAGTTTCTAACCAATGTTGCATCAGTGGGTTGGCCATGAATATCAGAACTGATTACAGTTCTTCTGAAACTATTGAAGAACTTAAGGTTCCTATAGAGAGTGAAAAAACTTTCAAATCCTGTGAGTCGAGCCGCTTTAACTATTGCCTTGGTTACTTGCAGAATAAGCTATCAGATGAGGATCCAAGAGCTAACTGTGAGCACTTTAACGACATCGAAGCTGAAACATCATTTTGGAGGAAACAGATGGAGGAAGTCATTTCTGAGATTCTGGAACTTTGTAGCAGTAACTGTGCCAACGGTAGCAATGTTGAGAAAACATCTGAAGTTGAGGCTTTGAACTATAATACTGAGAACTCCAAATTGCAAGAAAATGAAAGTAATGTAACTTTTCTTCCCAGGTTTGCTTCTGGGATGAGTAGGAAGCTGTGTGATATCTCTCAGAAATTACCGAAACTGGCTGGTTATTCGTCTCTGCATATGAATAATATGCAGGAGGAAGACCCAGAAGTGGGTTATGATTTTAGTTTCTTGAGACCAGATTATGATTTTGGCTTATCGGAAGAGCAGAAGTTACTTGATGTATGGTTTCCACAAACAGAATCTTAA 1269 0.4035 MNIISALVEVAISGKSRKKRRGGSGSVLDTLEKWKKHNSQLDFSNKRVKEIHKVPARGSKKGCMRGKGGPQNSDCKFRGVRQRIWGKWVAEIREPIKSKDVGKKVNRLWLGTFSTAVEAALAYDEAAKAIYGPFARLNFPENNGESICSIESSTLEDPGDKINYSEVENLEETVEKHDLSEVCVANNIEERVPIGVFHRPFYDIEAEILGESEGTKGEPEKVSNQCCISGLAMNIRTDYSSSETIEELKVPIESEKTFKSCESSRFNYCLGYLQNKLSDEDPRANCEHFNDIEAETSFWRKQMEEVISEILELCSSNCANGSNVEKTSEVEALNYNTENSKLQENESNVTFLPRFASGMSRKLCDISQKLPKLAGYSSLHMNNMQEEDPEVGYDFSFLRPDYDFGLSEEQKLLDVWFPQTES 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g2113 422 CDD AP2 75 142 IPR001471 GO:0003700|GO:0006355
Glsi07g2113 422 Gene3D AP2/ERF domain 75 142 IPR036955 GO:0003700|GO:0006355
Glsi07g2113 422 SMART rav1_2 76 146 IPR001471 GO:0003700|GO:0006355
Glsi07g2113 422 Pfam AP2 domain 75 132 IPR001471 GO:0003700|GO:0006355
Glsi07g2113 422 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 15 330 - -
Glsi07g2113 422 FunFam Ethylene-responsive transcription factor 2 75 141 - -
Glsi07g2113 422 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Glsi07g2113 422 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Glsi07g2113 422 SUPERFAMILY DNA-binding domain 76 141 IPR016177 GO:0003677
Glsi07g2113 422 ProSiteProfiles AP2/ERF domain profile. 76 140 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g2113 Glsi-ChrGlsi07 65483419 65487284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g2113 17 155 AP2-EREBP Transcription Factor Family AT2G40340 52.448 7.81e-41 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi07g2113 AP2 5.5e-13 CL0081