Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g2099 ATGTCACCTTCGCATCATGATCTGAAGAAGAAGAAGAAGAAGGGACTACCAAGAACAGCAACAATAGCAACAGACAAAGAAGGAGGAAGCAGCAGAAGAAGAAGAATGAGCGAGGAGGAAAAGAACAATGCAGATGAGGCGTTCTCATTCTTCTGGTTGGAAGATCCGCAGCTCAGTGGCAGTCTCAGAGTGTTGATCTCTGCAGAGAAGACACCACAATGGTTAGCGATTCTTCCCGAATATGATAGCATTGGATTCTTCGTTTTCTTTCTTCTTCAGTTCTGTCTAGTTTCAGCAGAACTTGATTCTGTATTCCGTTATTGTCTTGTATTTCAGGCTAGGGGGTTGAAGAAACACTTGAAGAGGCTCAATGCCCCCAAACATTGGATGCTTGAGAAGCTTGGCGGTGCCTTTGCACCAAAGCCATCATCTGGGCCCCACAAAGCCAGGCAGTGCCAGCCTCTTCTCATTACACTGCGAAATAGACTGAAGTATGCTCTCACATACAGAGAAGTTATATCCATCCTGATGCAGCGCCATGTTCTTGTTGATGGGAAGGTTAGGACAGACCAGACATATCCTGCTGGGTTCATGGATGTTGTATCAATTCCCAAGACAAATGAAAACTTCCGGCTTCTCTATGACACAAAGGGTTGTTTCCGTCTCCACCCTGTGAGGGATGAAGAGGCAAAGTTTAAGCTTTGCAAGGTTCGATCAGTCCAAGTTGGGCAGAAGGGCATCCCTTATGTAAATACTTATGATGGGCGCACAATCCGATATCCAGATCCTTTAGTCAAGGCAAATGACACCATTAAACTGGACCTGGAAACTAACAAGATCACTGACTTCATCAAATTTGATGTTGGGAACGTTGTTATGGTGACTGGAGGAAGGAATACAGGTCGAGTTGGTGTGATCAAGAACCGGGAGAAGCACAAGGGAAGCTTTGAGACCATCCACGTCCAAGATGCTACTGGTCAGGAGTTTGCAACTCGAATGGGTAACGTCTTCATAATTGGTAAAGGGACAAAGCCTTGGGTATCTCTTCCCAAAGGCCGTGGAATCAAGTTGTCTATTATTGAGGAGGCTAGAAGGAGAGTTGCTGCTCAGCATGAGGCAACTGCTTGA 1128 0.4574 MSPSHHDLKKKKKKGLPRTATIATDKEGGSSRRRRMSEEEKNNADEAFSFFWLEDPQLSGSLRVLISAEKTPQWLAILPEYDSIGFFVFFLLQFCLVSAELDSVFRYCLVFQARGLKKHLKRLNAPKHWMLEKLGGAFAPKPSSGPHKARQCQPLLITLRNRLKYALTYREVISILMQRHVLVDGKVRTDQTYPAGFMDVVSIPKTNENFRLLYDTKGCFRLHPVRDEEAKFKLCKVRSVQVGQKGIPYVNTYDGRTIRYPDPLVKANDTIKLDLETNKITDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVQDATGQEFATRMGNVFIIGKGTKPWVSLPKGRGIKLSIIEEARRRVAAQHEATA 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g2099 375 Pfam RS4NT (NUC023) domain 114 150 IPR013843 -
Glsi07g2099 375 Gene3D - 286 356 IPR014722 -
Glsi07g2099 375 Gene3D - 112 228 IPR036986 GO:0003723
Glsi07g2099 375 FunFam 40S ribosomal protein S4 286 356 - -
Glsi07g2099 375 Pfam KOW motif 288 321 IPR005824 -
Glsi07g2099 375 MobiDBLite consensus disorder prediction 1 17 - -
Glsi07g2099 375 ProSitePatterns Ribosomal protein S4e signature. 119 133 IPR018199 -
Glsi07g2099 375 Gene3D - 233 283 IPR038237 -
Glsi07g2099 375 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 113 364 IPR000876 GO:0003735|GO:0005840|GO:0006412
Glsi07g2099 375 MobiDBLite consensus disorder prediction 1 41 - -
Glsi07g2099 375 Pfam S4 domain 155 201 IPR002942 GO:0003723
Glsi07g2099 375 Pfam Ribosomal family S4e 206 280 IPR013845 -
Glsi07g2099 375 ProSiteProfiles S4 RNA-binding domain profile. 153 215 - -
Glsi07g2099 375 CDD S4 162 223 - -
Glsi07g2099 375 CDD KOW_RPS4 286 340 IPR041982 -
Glsi07g2099 375 MobiDBLite consensus disorder prediction 27 41 - -
Glsi07g2099 375 Hamap 30S ribosomal protein S4e [rps4e]. 118 349 IPR000876 GO:0003735|GO:0005840|GO:0006412
Glsi07g2099 375 FunFam 40S ribosomal protein S4 112 228 - -
Glsi07g2099 375 Pfam 40S ribosomal protein S4 C-terminus 323 369 IPR032277 -
Glsi07g2099 375 SMART s4_6 154 217 IPR002942 GO:0003723
Glsi07g2099 375 SMART kow_9 285 312 IPR005824 -
Glsi07g2099 375 FunFam 40S ribosomal protein S4 233 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g2099 Glsi-ChrGlsi07 65313942 65319542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g2099 113 373 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 85.824 1.20e-173 482