Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g2089 ATGGAGTGCATTCCTCCTGCTAACCCTACCACATCTGCAGGGTCATCCTCGAAGGCGAAGAAGAGCAAGGAGAAAAAGGGTGGGAAGAAAACCAAGGGGGTGAAGCTTTCCACCGACCCACAAAGCGTGGCAGCAAGGGAAAGAAGGCACCGAATCAGTGACAGGTTTAAGATTTTGCAGAGCATGGTTCCTGGTGGGAGTAAGATGGACACAGTGTCTATGTTAGAGGAAGCCATTCATTACGTGAAGTTCCTCCAAACCCAGATTTGGCTTCATCAAAACATGATCAGCTCCGTGGATGATCAGGACCAACAATCACCCGCACCCATGTTCCTTCCTCACTATTTTCCTAGTGAACAGTTCAATTCCCTTCAACCAAACACTTCAATAGATGATTCTCCGCAGAGTTTAACGGAGCTCCCAGAAGCCCAATATTGCTGCTTCCAAGGGGAAGTTGCCAACTTTGATGACACTATGAAATATTGGCCAGCTTAA 495 0.4747 MECIPPANPTTSAGSSSKAKKSKEKKGGKKTKGVKLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIHYVKFLQTQIWLHQNMISSVDDQDQQSPAPMFLPHYFPSEQFNSLQPNTSIDDSPQSLTELPEAQYCCFQGEVANFDDTMKYWPA 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g2089 164 MobiDBLite consensus disorder prediction 1 47 - -
Glsi07g2089 164 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 98 IPR036638 GO:0046983
Glsi07g2089 164 CDD bHLH_AtIND_like 37 96 - -
Glsi07g2089 164 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 36 85 IPR011598 GO:0046983
Glsi07g2089 164 Pfam Helix-loop-helix DNA-binding domain 46 86 IPR011598 GO:0046983
Glsi07g2089 164 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 20 150 IPR045843 GO:0003700|GO:0006355
Glsi07g2089 164 Gene3D - 39 106 IPR036638 GO:0046983
Glsi07g2089 164 FunFam Transcription factor LAX PANICLE 39 102 - -
Glsi07g2089 164 SMART finulus 42 91 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g2089 Glsi-ChrGlsi07 65206891 65207385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g2089 30 118 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 51.111 6.28e-25 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi07g2089 HLH 1.3e-08 No_clan