Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g2042 ATGGCCGCTAGTCCTCGCACCGTGGAGGAGATCTTCAAGGATTATAGTGCTAGAAGAGGAGGCGTCGTTCGTGCTTTAACTCAAGATGTTGATGAATTTTACGGGCTCTGTGATCCAGATAAGGAGAACTTGTGCCTTTATGGACATCCAAATGAAACCTGGGAAGTAACTCTGCCAGCGGAGGAAGTTCCACCAGAGCTTCCAGAGCCAGCTCTTGGAATCAATTTTGCTAGAGACGGCATGAATCGCAGGGACTGGCTTTCTCTTGTTGCTGTCCACAGTGATTCGTGGTTGCTCTCTGTGGCATTTTATCTTGGAGCCCGTCTTAACCGTAATGAAAGGAAACGGTTATTTAGCTTGATCAATGATCTTCCCACTGTTTTTGAAGTCGTGACTGAGAAGAAGCCGATAAAGGACAAGCCCATTGTGGACAGCGGAAGCAAATCACGAGGTAGCGCCAAGAGATCAAGTGATGGGCAAGTTAAAAGCAACCCGAAGTTTGCAGAGGAAGGTTACGAGGAGGATGAAGATGAGCACAGCGAAACCCTTTGTGGGAGCTGTGGTGGAAACTACAATGCTGATGAATTTTGGATTGGCTGCGATATCTGTGAAAAGTGGTTCCACGGTAAATGCGTGAAAATTACACCGGCAAAGGCTGAGGGCATAAAGCAATACAAATGCCCATCATGCAGCATGAGACGGGGCAGGCCCTAG 714 0.479 MAASPRTVEEIFKDYSARRGGVVRALTQDVDEFYGLCDPDKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTEKKPIKDKPIVDSGSKSRGSAKRSSDGQVKSNPKFAEEGYEEDEDEHSETLCGSCGGNYNADEFWIGCDICEKWFHGKCVKITPAKAEGIKQYKCPSCSMRRGRP 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g2042 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 231 IPR013083 -
Glsi07g2042 237 ProSiteProfiles Zinc finger PHD-type profile. 181 233 IPR019787 -
Glsi07g2042 237 PANTHER CPG BINDING PROTEIN 4 236 IPR045104 GO:0006355|GO:0042393
Glsi07g2042 237 CDD PHD_AL_plant 183 233 IPR044104 -
Glsi07g2042 237 ProSitePatterns Zinc finger PHD-type signature. 184 230 IPR019786 -
Glsi07g2042 237 SMART PHD_3 183 231 IPR001965 -
Glsi07g2042 237 MobiDBLite consensus disorder prediction 149 163 - -
Glsi07g2042 237 MobiDBLite consensus disorder prediction 139 174 - -
Glsi07g2042 237 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
Glsi07g2042 237 Pfam PHD-finger 184 231 IPR019787 -
Glsi07g2042 237 FunFam PHD finger alfin-like protein 176 232 - -
Glsi07g2042 237 SUPERFAMILY FYVE/PHD zinc finger 172 235 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g2042 Glsi-ChrGlsi07 64622239 64625841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g2042 2 236 Alfin-like Transcription Factor Family AT5G05610 76.695 3.40e-120 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Glsi07g2042 Alfin 3.5e-68 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g0754 08 5789275 5793870 Glsi07g2042 07 64622239 64625841 CCT