Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi07g2038 ATGGCAGAACCACGTTCCCCTGCATCTCCTCCACCTCCTTCTTCCATGGATAATCAGAATGCTTCCGGATCTACTTCTTCGTATTCGAGGTCTTCACGAGTCCGTCGCCAAGAGGAAAATCGAAGTGGCCACCCTCAATTTCAGTCCACTGAACTAGAGCCGCAGGGTATGACCGTCGTCCATCAAGGAGTCAGCTGGAGTTTGAATGATACATCGTCAATAGTTAGGGATGATGCGTGGTCCTGCGTCGTCGTTCTTTTCACCTTTTGGTTCTTTGTGTCGATGACTATGATACTTGGAGTGTATGGACCAGCGAACCTACTGACTGGCCCAAATTCTTCCATTCTTCTCCAGCCTAACTCTATATTTGTGCAATATATAAAGGTAGAAAACTTAGATTCAAAGCCAGGAGCCGTGCTCTATGGTTTATATGGATCCCCAGCTCCTGATGCTTTTACCGTTTGGACAGAAACTCGTAATGTATCCATTCCATCTGACAAGCACGAGGCAAGGAATGAAGAACTCTCTCAGTGGCTGGAGGACCCAACAAATCCTACTTCCACTCTCTCATGGAACATCATCCGTGGAACTGGTATGATTACACAGGACATATTCAGGTCATCGAGCTATTATGTGGCACTGGGTAATCTGAATGAGGAGGGGGAGGTGGAAATAAGCATCAGAGTAAGGGCCGCTTTATATAATACAACTAACGCTTACTACAAATGTGTTTTGATTAGTAACCCATGCGGCTTGAGTGTTTTTTTTCCTGGTGGAAATGCAGCTGTCTTAACAACTCCTGGACCACAACAGAACACGTCCAGTAATGAGTGGTACGTCAAACTGTCCTATGGACCAAGATGGTTCACATATATTTTTGGCGTAGGTGGTTTGACTTTGCTTATGTTTGTGGCCTTCAACTACTTGAGCAAGGTCCAGTGTGCTCATGGTGATAGAGCGGGAGTTAGACATGAGGAAACACCACCTCAGAGAACCCCTTTGCTTTCTTACAAAGATGATGATCTTTCAAGTTGGGGTTCATCATATGAATCTGTGTCACATGATGAGGAGGATCTTGACTTTGTCACAGGGGGTTCCATTAATGGGAAGTCCTTAGGTGACGGTGAAAGCAGTAATAATACCCGGCGTCTTTGTGCAATTTGCTTTGATGCTCCAAGGGACTGCTTTTTCCTTCCATGTGGACACTGTGTGGCTTGTTTTGAATGTGCAACTAGGATAGCAGAGGCAGATGGTACTTGTCCTGTATGTCATAGAAGCATGAAGAAGGTGAGGAAGATTTTTACTGTTTAA 1311 0.4508 MAEPRSPASPPPPSSMDNQNASGSTSSYSRSSRVRRQEENRSGHPQFQSTELEPQGMTVVHQGVSWSLNDTSSIVRDDAWSCVVVLFTFWFFVSMTMILGVYGPANLLTGPNSSILLQPNSIFVQYIKVENLDSKPGAVLYGLYGSPAPDAFTVWTETRNVSIPSDKHEARNEELSQWLEDPTNPTSTLSWNIIRGTGMITQDIFRSSSYYVALGNLNEEGEVEISIRVRAALYNTTNAYYKCVLISNPCGLSVFFPGGNAAVLTTPGPQQNTSSNEWYVKLSYGPRWFTYIFGVGGLTLLMFVAFNYLSKVQCAHGDRAGVRHEETPPQRTPLLSYKDDDLSSWGSSYESVSHDEEDLDFVTGGSINGKSLGDGESSNNTRRLCAICFDAPRDCFFLPCGHCVACFECATRIAEADGTCPVCHRSMKKVRKIFTV 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi07g2038 436 SUPERFAMILY RING/U-box 384 430 - -
Glsi07g2038 436 MobiDBLite consensus disorder prediction 15 31 - -
Glsi07g2038 436 MobiDBLite consensus disorder prediction 1 54 - -
Glsi07g2038 436 ProSiteProfiles Zinc finger RING-type profile. 385 424 IPR001841 -
Glsi07g2038 436 FunFam E3 ubiquitin-protein ligase APD2 374 435 - -
Glsi07g2038 436 Pfam Zinc finger, C3HC4 type (RING finger) 382 430 - -
Glsi07g2038 436 SMART ring_2 385 423 IPR001841 -
Glsi07g2038 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 376 436 IPR013083 -
Glsi07g2038 436 Pfam Domain of unknown function (DUF4793) 199 304 IPR032010 -
Glsi07g2038 436 PANTHER OS05G0521000 PROTEIN 55 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi07g2038 Glsi-ChrGlsi07 64580661 64585320 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi07g2038 358 433 C3H Transcription Factor Family AT3G06140 28.947 3.48e-06 47.0